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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTACTGCACTATATCCACCATCAACTCCAATGATGCCTGGTTGGCAGAGAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgtcattctcatatgtgtaacatattgtgcacctgagttggtactgcctttttatcttacacaaggaatactcttccag

Basic information

species Zea mays
transcript GRMZM2G043056_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043056_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g11820.1 (Oryza sativa), 5'ss of exon 10
CTTTACTGCACTATATCCACCATCAACTCCAATGATGCCTGGTTGGCAGAGAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgtcattctcatatgtgtaacatattgtgcacctgagttggtactgcctttttatcttacacaaggaatactcttccag------
||||||| |  |||||||||||  | ||| ||  ||    |||||||||||| | ||||| |||||||||||||| ||||||| |||||   ||| | ||||||| ||  |||||||||||  |  |  ||||||| | ||||     |  ||   ||||  || ||   |  |||  | | |||       
CTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGCAGAGAACACCCCAATTTGGAATGGGATATGCCATGCCATATCAGACTGCAATGgtatctat--cattctcatattagcgatttattgtgtatctga-----tgttgatgtttttcctaactagataaattatttaccaattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811142|gb|BQ295620.1|BQ295620
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|60357017|gb|DN223990.1|DN223990
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCGTGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|60338909|gb|DN205882.1|DN205882
EST:     ATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: ATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|31355485|gb|CD439842.1|CD439842
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|22545636|gb|BU097995.1|BU097995
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|5566802|gb|AI881668.1|AI881668
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
EST: gi|31361667|gb|CD446024.1|CD446024
EST:     GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         TTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT
genomic: GAGCCCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... actcttccagTTCCAGGGAATGCAAGCATATCCTCAGCCTACATATCAGCAACCTGTATAT