1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGAACTTCCATGAATTTGTACACGAGTACTTGCAAAAACCAGAGTTCGCCGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccccctgccaacttcatagattttgtacccctgaatgctgccggcttttccccacctcagcactaatgcgtgaaatgcag
species | Zea mays |
transcript | GRMZM2G042398_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|26558555|gb|CA830790.1|CA830790
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|18165055|gb|BM334900.1|BM334900
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|22472517|gb|BU036997.1|BU036997
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|211475864|gb|FL467329.1|FL467329
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|87155667|gb|DY400456.1|DY400456
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGEST: gi|18164178|gb|BM334017.1|BM334017
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
EST: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAA GTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
genomic: CGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccc ... tgaaatgcagGTACACTGTCACAAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAACTTCCATGAATTTGTACACGAGTACTTGCAAAAACCAGAGTTCGCCGAGCTGATGCGGAGGCTGGGTGCCCTCGGTGATGGAAGGCAGGACCAAAgtaatgtccccctgccaacttcatagattttgtacccctgaatgctgccggcttttccccacctcagcactaatgcgtgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG