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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcgattgtctccctaatctttttgtaactatcaccttgcttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctag

Basic information

species Zea mays
transcript GRMZM2G042027_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g29860.1 (Oryza sativa), 5'ss of exon 9
GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcgattgt-ctccctaatctttttgtaactatcaccttgc--ttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctag
|| || |||||| ||||||||||||||||||||||||| ||||||||||||||||  |||  ||| |  | | |  ||  ||| |||   |       |  ||  || ||   ||  |  |    |||   |||| |||  | || ||    ||  |||| |||  ||| ||                       
GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaaattctgtttcttcctcactttctaatccttgttggacaatttttctgttcttatgttgccgtccttcttttgt-ttacctgct-tctataacccatcatttctttctgctag---------------------

upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G15150.1 (Glycine max), 5'ss of exon 9
GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcgattgtctcc--ctaatctttttgtaactatcaccttgcttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctag
||  ||||  |  ||||||||||||| |||||| |||| ||||||||||| |||| |  |             || |||||| |  |  ||| |    |  |    | |||     | |     | |     || | |||||   |  |    |                                        
GCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgtgccaatataggcttatctttatacatgtattatagagagt----aatatgaggatatacatacatattgagtttcatttctgataactatgatg--------------------------------------

upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 10
GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcgattgtctcc--ctaatctttttgtaactatcaccttgcttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctag
||   |||  |  ||||||||||||| |||||| |||| ||||||||||| |||| |  |  |   |      |  ||| || |  |  ||  |    |     | || || ||  |   |    ||| ||| || | | |  |  |   ||  |                                       
GCACGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgtaccattatgggcatatcgttatacatgtactatagagtaatatgaggatatacatacata---ttgagtt-tcatttctgataactatgatgac--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092776|gb|DV521150.1|DV521150
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|28984641|gb|BQ539144.2|BQ539144
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|113702185|gb|EE679689.1|EE679689
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|113702087|gb|EE679591.1|EE679591
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|71302083|gb|DR787129.1|DR787129
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGA
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGA
EST: gi|76011416|gb|DT938586.1|DT938586
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|71302081|gb|DR787128.1|DR787128
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|16918359|gb|BM073712.1|BM073712
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|211226520|gb|FL435621.1|FL435621
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|91054196|gb|EB164614.1|EB164614
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACA
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACA
EST: gi|91056577|gb|EB166995.1|EB166995
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|33092443|gb|CF052437.1|CF052437
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACCCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|78083391|gb|DV511784.1|DV511784
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|50325363|gb|CO520489.1|CO520489
EST:     AAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: AAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
EST: gi|60342707|gb|DN209680.1|DN209680
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATA
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATA
EST: gi|67018887|gb|CO447636.1|CO447636
EST:     GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTG                         GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT
genomic: GAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcg ... tttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGAT