Sequence
atgc intronic sequence ATGC exonic sequenceCTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattttgctcctgaacatggtattgttacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtggttacccctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040720_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 5'ss of exon 12
CTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcatttt-gctcctgaacatggtattgttacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtggttacccctc
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CTGTTTGGCGAAATGATTTTTGTACATGGTTTTGTTCATGGCGATCCTCATCCTGGAAATATATTAGTTTCTCCTCAAGGCCAAGGGAAATTTTCATTAGgtgctcttttttgcttaaaaacatggcatttcctgcatgtctatatgcatatatttatattgtaggattag-gtcctcatcgtttgcccatatttcttaat
upper sequence: GRMZM2G040720_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g34830.1 (Oryza sativa), 5'ss of exon 9
CTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattt--tgctcctgaacatggtattgt-tacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtggttacccctc
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TTGTTTGGCGAAATGATTTTTGTACATGGTTTTGTTCATGGCGATCCTCATCCTGGAAATATATTAGTTTCTCCTCAAGGCCAAGGGAAATTTTCATTAGgtgctttttttttgcttcaagacatcgcatttcctacatgt-ctatatgcatatatttatattgtaggattag-gtcctcatcgcttgcccatatttcttaa-
upper sequence: GRMZM2G040720_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G40830.1 (Glycine max), 5'ss of exon 10
CTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattttgctcctgaacatggtattgttacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtgg--ttacccctc--
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CTGTTTGCTGAAATGATATTTGTACATGGCTACATACATGGTGATCCACACCCTGGTAATATATTAGTTTCTCCTGAAGGTTGTAATGGTTTCTCTTTGGgtacgtatttggataattttttttctaattggattctaactgaaac--ttaacatggaagaattaaaccttgacctttttcaccctattggaattattttgcag
upper sequence: GRMZM2G040720_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT1G65950.1 (Arabidopsis thaliana), 5'ss of exon 11
CTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattttgctcctgaacatggtattgttacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtggttacccctc--
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GTGTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATATACTAGTTTCTCCTGAAGGCCAGAATGGCTTCTCTCTAGgtact--ttgtgttcgtaattctatcatgac--ctctcactgtttccagattctaatcat--agaacttttattcttcttgaaattacttttggatgaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9824900|gb|BE574997.1|BE574997EST: TCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAG TTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGG
genomic: TCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattt ... gcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattttgctcctgaacatggtattgttacacttactataatcattaaacagtagtgaagaaatactatttgcattgaagagagtggttacccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG