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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACTGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctcttcagttctttttattccatttcagccatttgtatgctgattccttgttcacaagtttcaattcttagaactaatgttttttctccatatt...

Basic information

species Zea mays
transcript GRMZM2G039683_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039683_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g54020.1 (Oryza sativa), 5'ss of exon 11
CTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACTGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctcttcagttcttttta--ttccatttcagccatttg-tatgctgattccttgttcacaagtttcaattcttagaactaatgttttttctccatatt-
|||||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||   ||| || ||  || ||| |  |  |||||| |  || ||  ||||||||||| |||  ||||||| ||         ||  ||||  | |||   || | 
CTTATCATGCTGGCCTAAATAGCAAGGTGCGGAGTTCTGTTCTTGATGATTGGCTTTCCTCGAGAACTCAAGTTGTTGTTGCCACTGTTGCATTTGGgtatagtttccctccacatcatttgaaatatcatttctgttatgtgacatgctgattccatgtctacaagttccagc-------acacatgtagtatctgagtactg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60399085|gb|DN231899.1|DN231899
EST:     TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGG-A                         T
genomic: TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctct ... tatcttttca-
EST: gi|60399085|gb|DN231899.1|DN231899
EST:     TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGG-A                         T
genomic: TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctct ... tatcttttca-
EST: gi|60350164|gb|DN217137.1|DN217137
EST:     TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGG-A                         T
genomic: TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctct ... tatcttttca-
EST: gi|60350164|gb|DN217137.1|DN217137
EST:     TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGG-A                         T
genomic: TGGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGTAttacttctct ... tatcttttca-
EST: gi|89761057|gb|DY689223.1|DY689223
EST:     GGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGGAT-                         GGGTATTGATAGACAAGATGTCCGTATTGTTTGCCACTTCAACTTGCCTA
genomic: GGCTTTCATCGAGAACTCAAGTTGTTGTTGCAACTGTAGCATTTGGG-TAttacttctct ... tatcttttcaGGGTATTGATAGACAAGATGTCCGTATTGTTTGCCACTTCAACTTGCCTA