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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTGGGGCTAAGGAAGCAAATCTTTACACTGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatatttatactcaactagcgatattaatgttctgattatatctgttgtgttagtgatatatatcttaccttattgacaaattgtgattaaaataatgacag

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 10
GACGTGGGGCTAAGGAAGCAAATCTTTACACTGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatatttatactcaactagcgatattaatgttctgattatatctgttgtgttagtgatatatatcttaccttattgac-aaattgtgattaaaataatgacag
||||||| || ||||| || |||||||||||||| || ||||| || |||||||||||||| |||| | |||| || |||||| |   || |  |   | |        || | |   || |       |||  |||| |  | | |  || ||  || || |||||||   |       ||    
GACGTGGAGCGAAGGAGGCGAATCTTTACACTGAGATAGCTGAAGGCATCCATGCTTATGGAATAAAAGGCCACCGTCATGgtaacccttgtttt--gccattttccaaaaagctggaatcaacatcagtgttgtagttac-tgtgttatagctctttaacgaaattgtttattctcccttgga--

upper sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 5'ss of exon 10
GACGTGGGGCTAAGGAAGCAAATCTTTACACTGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatat----ttatactcaactagc-------gatattaatgttctgattatat-ctgttgtgttagtgatatatatcttacc-ttattgacaaat-tgtgattaaaataatgacag------------------------------------------------------------------------
||||||| ||||||||||| ||||| ||||| || || ||||| || || ||||||||||| |||| | |||| ||||||||| || |    || | ||  | ||||        | ||||||  | |||   ||| ||| | | | |  ||  | |||  | |  | ||  |  ||| |   | ||| | | ||   |                                                                        
GACGTGGAGCTAAGGAAGCCAATCTCTACACCGAGATAGCTGAAGGCATTCATGCTTATGGAATAAAAGGCCACCGGCATGgtaattttgtttttttctagattagctgaaatcaacattaattatgtgaccttatactgctctttaacagaattttattctcctgtgataaatgaatatactaataatagagtgtttgcttatatttatcttgttagttacctttaaggtagcctttctttattaacacaatgtgataaaaccatgccag

upper sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 9
GACGTGGGGCTAAGGAAGCAAATCTTTACACTGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatatttatactcaact-agcgatattaatgttctgattatatctgttgtgttagtgatatatatcttaccttattgacaaattgtgattaaaataatgacag
| ||||| || ||||| |||||||| ||||||||||| ||||| || || ||| ||||||| || ||||| ||||| |||||| | |||| |    | |  |  |||||||   |   |   |   |   | | ||    ||   | |||| || | |  |   ||  |  ||    | ||||   
GTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTCATTCTTATGGTATTACAAGGCATCGCCATGgtaagattt-tgtaaatcagaatgatattacaatgaagcaaaatccctatctatttacaattattttctttccatttaaattcataatattttt--tcatgat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6448353|gb|AW181119.1|AW181119
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATACCAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|110202395|gb|EC884292.1|EC884292
EST:     GGATAACAAGCCATCGGGCATG                         TGCCTGAGATTGAGCAAGGGCTTACAGATGCTGGGGAATCAAAAGTTACT
genomic: GGATAACAAGCCATC-GGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACT
EST: gi|71762552|gb|DR960489.1|DR960489
EST:     TGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|148958090|gb|EC904281.2|EC904281
EST:     GGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: GGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|74234670|gb|DT642584.1|DT642584
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|87155331|gb|DY400120.1|DY400120
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|26558690|gb|CA830925.1|CA830925
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|33093061|gb|CF053055.1|CF053055
EST:     GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|32931562|gb|CF036374.1|CF036374
EST:     GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|78080159|gb|DV508571.1|DV508571
EST:     CAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: CAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|22473066|gb|BU037546.1|BU037546
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGG-ATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: gi|67010559|gb|CO439308.1|CO439308
EST:     TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG                         TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA