Sequence
atgc intronic sequence ATGC exonic sequenceGCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatcttcttgtctcatatttacagttcaactgttcaagttgcaattgttcaacaattcacagtcattttttattatttattgtttcttattgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037683_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 5'ss of exon 10
GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatcttct-----tgtctcatatttacagttcaa-ctgttcaagttgcaattgttcaacaattcacagtcattttttat---tatttattgtttcttattgtag
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GCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTTAAGgtatagatctcttgtatacaattaatctttatgtttttttctacttccgtatatattattctgcatgttgtataaatgtctcatattcatgtattatttcttgatgtag
upper sequence: GRMZM2G037683_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatcttcttgtctca--tatttacagttcaactgtt-caagttgcaattgttcaacaattcacagtcattttttattatttattgtttcttattgtag
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GTTGAAAGAATTTCGTGGTCACACATCTTATGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATCACTGCCTCCAGTGATTGTACAGTAAAGgta--aattcttcggctttggctgtcagcagtatcattgtttctcatttggactctctgccccttc--tgccgtgtaataacagtc-ttgtttccttgcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211475898|gb|FL358552.1|FL358552EST: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAG GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
genomic: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
EST:
gi|67019283|gb|CO448032.1|CO448032EST: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAG GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCA-GCCACCACCT
genomic: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
EST:
gi|22521028|gb|BU079839.1|BU079839EST: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAG GTCTGGGATACTAAAACAACAGATT
genomic: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATT
EST:
gi|211442071|gb|FL307771.1|FL307771EST: TTGTACTGTTAAG GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
genomic: TTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
EST:
gi|91873183|gb|EB403140.1|EB403140EST: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAG GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTTCA-GCCACCACC
genomic: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTT-CAAGCCACCACC
EST:
gi|211277652|gb|FL322062.1|FL322062EST: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTANC GNCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
genomic: CTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
119GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
65GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
69GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG
Block sizes:
49 (upstream exon),
38 (downstream exon)
Score:
24GCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATTACAGCTTCCAGTGATTGTACTGTTAAGgtgctgatct ... cttattgtagGTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG