1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGTTTTGGCTATCTAAACTCAGAAGTCCTGTTGTGCAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatgtcgccatttagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcag
species | Zea mays |
transcript | GRMZM2G035150_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|71763432|gb|DR961369.1|DR961369
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|211175960|gb|FL481220.1|FL481220
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCTEST: gi|24462661|gb|BM660192.1|BM660192
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
EST: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG AGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGTCCTTCT
genomic: CTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatg ... gttgctgcagAGTTGCCGGTTTTGGAGTTTGACAACAAAAGGAAAAGGTGGTGGCCCTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTTTGGCTATCTAAACTCAGAAGTCCTGTTGTGCAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatgtcgccatttagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG