Sequence
atgc intronic sequence ATGC exonic sequenceGAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaatactgtacttgtatgatatttgttatttgcattgatgaaaagatctcgttttcatgagaactgctgcttatctcaactagagttttcatgtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g49420.1 (Oryza sativa), 5'ss of exon 10
GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgt-ttgtaatactgtacttgtatgatatttgttat-ttgcattgatgaaaagatctcgttttcatga-gaactgctgcttatctcaactagagttttcatgtc------
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GAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAGgtcttgtattgctgtaccctaa--gtttttgtgatattacactga-------gcttaatttaggtgataagcttcatatagcttcaactcttgtttgtgcaacctatat
upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 11
GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaatactgtacttgtatgatatttgttatttgcattgatgaaaagatctcgttttcatgagaactgctgcttatctcaactagagttttcatgtc-
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GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGATGCATTGAATGAATGCATACAGgtttgtaacattcatctatctggatggatgatttgtacactcatctttttattggaattatgttacagttccgttatata-caatcctatttaccttctct
upper sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 11
GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaatactgtacttgtatgatatttgttatttgcattgatgaaaagatctcgttttcatgagaactgctgcttatctcaactagagttttcatgtc--
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GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGgtttgtaacattcatctatccaggtggaagatttgtacactcatctttttattggaattatattacagtt-ctg-ttatatacattctcatttaccttctgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93284006|gb|EB676270.1|EB676270EST: AGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAG CTATCAGGAACACTTCTTGATCAAAATCCAGTAAGATCTGCAGTGGAAGGT
genomic: AGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaata ... tctcgatcagCTATCAGGAACACTTCTTGATCAAAATCAAGTAAGATCTGCAGTGGAAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaatactgtacttgtatgatatttgttatttgcattgatgaaaagatctcgttttcatgagaactgctgcttatctcaactagagttttcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgaaaa