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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCGCACACCAATCATTGTATTTACACAGACAGGCTCCATGGCTGTCCTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcctttgtggttccccttcatgacaataacctaatctttcatgtgatattatctatgaaacatgctttgcatcgagctagttcatagccttcctgaatccaatgattgaaattggcaaatgtgctctggagtagactgatatttaggggaacaattgttgtag

Basic information

species Zea mays
transcript GRMZM2G033526_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033526_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 5'ss of exon 10
CCCTTCGCACACCAATCATTGTATTTACACAGACAGGCTCCATGGCTGTCCTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcctttgtggttccccttcatgacaataacctaatctttcatgtgatattatctatgaaacatgctttgcatcgagctagttcatagccttcctgaatccaatgattgaaattggcaaatgtgctctggagtagactgatattta--ggggaacaattgttgtag
||||| |||| ||||| ||||| |||||||  || ||||||||||| ||||| || ||||| || || |||||||||||| | |||||||||||||| |||| ||||  |||  | || |     |     |   || |||||||  |    || | | |       |     |  ||| |  | ||  | |  ||   | |||  ||||||  || |||  |||  ||||||||||  ||||||   |||   || |||  |||||| ||
CCCTTTGCACCCCAATTATTGTGTTTACACGAACCGGCTCCATGGCAGTCCTTCTCAGCCACTACCGGCCCTCGTCTACAATTTTTGCATTTACAAATGAgtaagttttttttggatttctacctacatgcaatgccaaatcttttttccc-tagtgttttcattttag----taaatcaattttgtaaacattctaaataaata-aatgataaaagttgaaaaagatgctctggag--gactgaccattatgaggaaactgttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133857|gb|BQ833942.1|BQ833942
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|6526771|gb|AW216050.1|AW216050
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|21759868|gb|BQ635409.1|BQ635409
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTCCAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60351363|gb|DN218336.1|DN218336
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60355665|gb|DN222638.1|DN222638
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|45567965|gb|CK985835.1|CK985835
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|13177888|gb|BG349071.1|BG349071
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|20802326|gb|BQ293376.1|BQ293376
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60355637|gb|DN222610.1|DN222610
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|32858382|gb|CD998063.1|CD998063
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTA
EST: gi|22542067|gb|BU092505.1|BU092505
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|24765370|gb|CA400529.1|CA400529
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60397119|gb|DN229938.1|DN229938
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60354896|gb|DN221869.1|DN221869
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60338482|gb|DN205455.1|DN205455
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|37418065|gb|CF646693.1|CF646693
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|31357830|gb|CD442187.1|CD442187
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|33467026|gb|CF244075.1|CF244075
EST:     ACACTA-TTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: ACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|213182699|gb|FM195337.1|FM195337
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|87155458|gb|DY400247.1|DY400247
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60341691|gb|DN208664.1|DN208664
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60356976|gb|DN223949.1|DN223949
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|78025170|gb|DV493557.1|DV493557
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|211275556|gb|FL192922.1|FL192922
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|67016939|gb|CO445688.1|CO445688
EST:     CTCCTGAGCCACTATCGTNCCTCGTCTACACTATTTGCATTTACCAACGA                         A
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtag-
EST: gi|67016939|gb|CO445688.1|CO445688
EST:     CTCCTGAGCCACTATCGTNCCTCGTCTACACTATTTGCATTTACCAACGA                         A
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtag-
EST: gi|60394678|gb|DN227548.1|DN227548
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60395622|gb|DN228492.1|DN228492
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|5739696|gb|AI947272.1|AI947272
EST:     CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCGTTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|4967114|gb|AI692056.1|AI692056
EST:     CGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|76287860|gb|DV027428.1|DV027428
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|60400092|gb|DN232899.1|DN232899
EST:     CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: gi|148929002|gb|EC874192.2|EC874192
EST:     TCCCTCGTCTCCACTATTTGCATTTACAAACGA                         GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: TCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA