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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAGgtaagatgacttttcaacttggcgatttagtagtaaatagacacacgtaagctctatctgtcacccatgttttctttcaattcaatccttgtgcatggat...

Basic information

species Zea mays
transcript GRMZM2G032222_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 10
AAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAGgtaagatgacttttcaact---tggcgatttagtagtaaatagacacacgtaagctctatctgtcacccatgttttctttcaattcaatccttgtgcatggat
||||| ||||| ||||||||||| || | | ||||||| |||||||||| | ||||||||||||| |||||  | |||||||||||||| || ||||| || | | ||||     ||   |||| || |||||||||  ||  | |  | ||       | |||   |   ||        | |  ||  |||   
AAATTCAAGCAACACCCTGCTGTCAGGACAATTTTGGATGGTGGAACAGTTCTTCAGTATGGTGCTCGTACGTTGAATGAAGGTGGTTTTCAAgtaag-tggcatgtcaaagaaatgaaaattttgttgtaaatagattcatatgatatgtaaactctgcgcataactatattgggcatc-tgccggtttatgac-

upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA15G03360.1 (Glycine max), 5'ss of exon 10
AAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAGgtaagatgactttt-caacttggcgattta---gtagtaaatagacacacgtaagctctatctgtcacccatgttttctttcaattcaatccttgtgcatggat
||| | ||||| || |||||  ||| |  | || ||||||||||||||| ||| |||||||| || || ||| | |||||||||||||| ||||||   |     |   |  |       |||   | | | ||| |  | |   |||    || | |||   |||||     |     ||  ||     ||||   
AAACTAAAGCATCATCCTGCAATTAAATCATTTCTGGAAGGTGGAACAGTTATCCAGTATGGAGCTCGCACTTTAAATGAAGGTGGTTTTCAGgtacattagtaataatagttccttttcttatatgcaatcaatgggaaaattcaag---aatgtatcatt-atgttccacatgttgccagcccagcctcatgagg