Sequence
atgc intronic sequence ATGC exonic sequenceCAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaatgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030877_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g05480.1 (Oryza sativa), 5'ss of exon 10
CAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaa------tgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag
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CAAGGCCGACGTGTTCCACCTCATCACCGGGATGTGGGCGACCCCAGCTGAGCGGTGCTTCCTCTGGATGGGCGGATTCCGGCCCTCCGAGCTGCTCAAGgtatggatgaccttat---ctctga-acaaaacatcagtcatcagattacagcgtctcttgtatttgctgaattgagtctatggctaatttgatcagaaa--caag
upper sequence: GRMZM2G030877_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g05680.1 (Oryza sativa), 5'ss of exon 10
CAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaatgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag-----
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CAAGGCCGACGTGTTCCACCTCATCACTGGCACGTGGGCCACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGCGGTTTCCAACCGTCCGATCTGCTCAAGgtatatacatactcgag-atcctatcctctaactt--acttttgtctgacatgagt-cactgacatgtggatcttctactcaacgg-gctcacatgtcagtaatt
upper sequence: GRMZM2G030877_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ30797 (Selaginella moellendorffii), 5'ss of exon 5
CAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaatgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag
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CAAGGCCGACGTCTTCCACCTCGTCTCCGGGATGTGGAAGTCTCCCGCCGAGCGCTGCTTCATGTGGATGGGAGGATTCAGACCCTCGGAGCTTCTCAAGgta-agctgtatcgtatcgatc-gagtctgactttaagttggctgacgagaagatgaaaaaaaaaatgtttttttctgttag------------------
upper sequence: GRMZM2G030877_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ22847 (Selaginella moellendorffii), 5'ss of exon 4
CAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaatgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag
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CAAGGCCGACGTCTTCCACCTCGTCTCCGGGATGTGGAAGTCTCCCGCCGAGCGCTGCTTCATGTGGATGGGAGGATTCAGACCCTCGGAGCTTCTCAAGgta-agctgtatcgtatcgatcttaagttggctgacgagaagatgaaaaaatttgtttttttct--gttag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481432|gb|EY254316.1|EY254316EST: AGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAG ACACTGCTGCCCCAGCTAGATCCACTGACA-AGCCAGCAAGT
genomic: AGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattc ... tctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGC-AGCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATCCGACGTGTTCCACCTCATCACTGGGGTGTGGACGACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattcgtttcagtactctgagatagaacatcagatatcaaaaaaaatgtgtgcatgcacaaggtaggctgacactgactggagcagggaactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaaa