1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TATCACTGTGGCGTTTCCTGTGACTCCTCTCCTTCTCGCAAGAGCACGTTTCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGATgtgagcgttaatttttttttttgggtctctgctgtaaatgcttcgttttattcgttggcacatatataaatagagccgaactgacgtgtttcctgtctgtgcaacccccatatattaccag
species | Zea mays |
transcript | GRMZM2G030862_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGAT GTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAAEST: gi|60344069|gb|DN211042.1|DN211042
genomic: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGATgtgagcgtta ... atattaccagGTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAA
EST: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGAT GTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAAEST: gi|60343785|gb|DN210758.1|DN210758
genomic: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGATgtgagcgtta ... atattaccagGTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAA
EST: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGAT GTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAA
genomic: TCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGATgtgagcgtta ... atattaccagGTTATCAGCAGAGTTGGTGACCTCGTGGGCATCAAGTACTTCCCTGCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCACTGTGGCGTTTCCTGTGACTCCTCTCCTTCTCGCAAGAGCACGTTTCTGCATTTCAGCTTCGCACACTAGGGAGGACCTGACGAAAGCCCTCGATgtgagcgttaatttttttttttgggtctctgctgtaaatgcttcgttttattcgttggcacatatataaatagagccgaactgacgtgtttcctgtctgtgcaacccccatatattaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA