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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGATAATAGTTGCGCTGGCCTCCAGTACTCCAAGATGAAGCTTATGTCTCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttcttgtactagaatcttctatagatccaccatggagtacaacgtgcttgctatcttaatgtgatttagctgatgtatcgattcatgttttgtgttttacag

Basic information

species Zea mays
transcript GRMZM2G029573_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g47850.2 (Oryza sativa), 5'ss of exon 10
AACGATAATAGTTGCGCTGGCCTCCAGTACTCCAAGATGAAGCTTATGTCTCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttcttgtactagaat----cttctatagatccaccatggagtacaacgtgcttgctatcttaatgtgatttagctgatgtatcgattc-atgttttgtgttttacag
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AACGATAATAGCTGTGCCGGCCTTCAGTACCCTAAGATGAAACTTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacaca-acttgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32913902|gb|CF018714.1|CF018714
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGATAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|14244956|gb|BG842894.2|BG842894
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|31362536|gb|CD446893.1|CD446893
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|71760287|gb|DR958224.1|DR958224
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|211106984|gb|FL115271.1|FL115271
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGC
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGC
EST: gi|211518595|gb|FL052563.1|FL052563
EST:     CTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACANCA-                         C-TTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGG
genomic: CTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACA-CAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGG
EST: gi|6342748|gb|AW165572.1|AW165572
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|67018136|gb|CO446885.1|CO446885
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|33091813|gb|CF051807.1|CF051807
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|211038354|gb|FL445366.1|FL445366
EST:     CTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACANCA-                         C-TTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGG
genomic: CTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACA-CAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGG
EST: gi|37401297|gb|CF638011.1|CF638011
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|60343079|gb|DN210052.1|DN210052
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|6012497|gb|AW061934.1|AW061934
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|88751312|gb|DY535453.1|DY535453
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|211287671|gb|FL254549.1|FL254549
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGAC-CAG                         CCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCA-CAGATTGTTAGGAAGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCC-TTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGG
EST: gi|71764309|gb|DR962246.1|DR962246
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|31356811|gb|CD441168.1|CD441168
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
EST: gi|37379091|gb|CF626275.1|CF626275
EST:     TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAG                         CCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG
genomic: TCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttct ... tgttttacagCCTTCGGCGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTAAGAAAGGG