Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttgattcataagtgaagcacatatacaatatctacaagatcaataattatttatggttgatacgttgttgtacag

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 10
GTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacct--ttgattcataagtgaagcacatatacaa--tatctacaagatcaataattatttatggt--tgatacgttgttgtacag
|||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||  |  ||  || |   |  ||| |  | ||  |  || ||||||   |||   ||||||||  |  | | |     ||||||||
GTTGCTAAAGATCTTGTTTTTGAGAAAACATATTGCCCATTGGGTGTTCTCCTAATTATTTTTGAGTCCCGTCCTGATGCCTTGGTACAGgtaaaatgatttttttagttggaaagaaactgtatcagttaactacaaag-caacg-ttatttatcatattaacataacattgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931318|gb|CF036130.1|CF036130
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|33094388|gb|CF054382.1|CF054382
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAGGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|32931519|gb|CF036331.1|CF036331
EST:     TGGGTGTTCTTCTCATTATTTNTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|24934245|gb|CA452463.1|CA452463
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|211307860|gb|FL092738.1|FL092738
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|211307861|gb|FL092739.1|FL092739
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCCTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|211307862|gb|FL092740.1|FL092740
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
EST: gi|32932079|gb|CF036891.1|CF036891
EST:     TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG                         ATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG
genomic: TGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAGgtaacctttg ... tgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGG