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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctctctctgactctctatgtatcttttttttgtatttacattttatagtgagtgtgttacttgagtaataatgtagctactaaacggttaaacc...

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 10
AATGTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctctctctgactctctatgtatcttttttttgtatttacattttatagtgagtgtgttacttgagtaataatgta-gctactaaacggttaaacc--
||||||||||||||||||||||||||||  ||| | |||||||| ||||||||||  |      |      || |    || || |||    ||| | |  | ||| |      |||     | || |||||   | || |  ||   |  |    
AATGTGTTTGACTTCCAACTTATCAAGGGCTTGTTGTCTCGGCCAGATTTCAGgttctgtatatttatttgcttttcacatgttgtttagtcattaataaataatactaga---gttttggaaatattaatgcctgataatctacatgtgtatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841182|gb|CD980863.1|CD980863
EST:     GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAG                         GTTCATATTCGATGCAATGCATGCAATTACTGGTGCTTATGCAGGACCCAT
genomic: GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctct ... aattttacagGTTCATATTTGATGCAATGCATGCAATTACTGGTGCGTATGCCGGACCCAT
EST: gi|9028761|gb|BE238801.1|BE238801
EST:     GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAG                         GTTCATATTCGATGCAATGCATGCAATTACTGGTGCTTATGCAGGACCCAT
genomic: GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctct ... aattttacagGTTCATATTTGATGCAATGCATGCAATTACTGGTGCGTATGCCGGACCCAT
EST: gi|32839734|gb|CD979415.1|CD979415
EST:     GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAG                         GTTCATATTCGATGCAATGCATGCAATTACTGGTGCTTATGCAGGACCCAT
genomic: GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctct ... aattttacagGTTCATATTTGATGCAATGCATGCAATTACTGGTGCGTATGCCGGACCCAT
EST: gi|32801890|gb|CD954126.1|CD954126
EST:     GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAG                         GTTCATATTCGATGCAATGCATGCAATTACTGGTGCTTATGCAGGACCCAT
genomic: GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctct ... aattttacagGTTCATATTTGATGCAATGCATGCAATTACTGGTGCGTATGCCGGACCCAT
EST: gi|32943498|gb|CF048317.1|CF048317
EST:     GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAG                         GTTCATATTCGATGCAATGCATGCAATTACTGGTGCTTATGCAGGACCCAT
genomic: GTGTTTGACTTCCAACTTATCAAGGATTTGCTTTCTCGGCCTGATTTCAGgtcttcctct ... aattttacagGTTCATATTTGATGCAATGCATGCAATTACTGGTGCGTATGCCGGACCCAT