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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTAGGAAAGAAGGTTTGCTATGTACAGTTCCCTCAAAGATTTGATGGGATTGATCGCCATGACCGATATGCTAACCGGAATGTTGTCTTTTTTGATgtaagatttagcattcatatttctgaggtgttctgttgtctataatatgtattccttggtgaatgttttactaacatttgtgttgtgcag

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 6
TTTACTAGGAAAGAAGGTTTGCTATGTACAGTTCCCTCAAAGATTTGATGGGATTGATCGCCATGACCGATATGCTAACCGGAATGTTGTCTTTTTTGATgtaagatttagcattcatatttctgaggtgttctgttgtctataatatgtattccttggtgaatgttttactaacatttgtgttgtgcag
|||  | |||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||||| || ||| |||| || ||||| || ||||||||||||  |   |||||||||||| |  |||  |    |   ||| || |  |   |    ||||  ||||||||||  |  | |||
TTTGGTTGGAAAGAAGGTTTGTTATGTGCAATTCCCTCAAAGGTTTGATGGGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatttgcc--ccatatttctgagatactctcctacacaagttatttaattttc--ttgcagtttatctaacatttgcttgttacag

upper sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 10
TTTACTAGGAAAGAAGGTTTGCTATGTACAGTTCCCTCAAAGATTTGATGGGATTGATCGCCATGACCGATATGCTAACCGGAATGTTGTCTTTTTTGATgtaagatttagcattcatatttctgaggtgttctgttgtctataatatgtattccttggtgaatgttttactaacatttgtgttgtgcag
  | || |||||||| || |||||||| |||||||| || || ||||||||||||||| | ||||| |||||||||||||||||  |||| || |||||||||||  |     |    || |||  | || |   ||   ||   ||    ||   |   || ||  ||  | |  ||| | |     ||
ACTGCTGGGAAAGAAAGTGTGCTATGTTCAGTTCCCACAGAGGTTTGATGGGATTGATAGGCATGATCGATATGCTAACCGGAACATTGTATTCTTTGATgtaagcctgcagttctccatatctt-gatgctagttttgatagtttagagcttttctatcgattgacttggtcat-tttatatgcactag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194717185|gb|FK934338.1|FK934338
EST:     GGATTGATCGCCATGACTGATATGCTAACCGGAATGTTGTCTTTTTTGAT                         ATCAACATGAAAGGTTTGGATGGTATTCAGGGTCCAATTTATGTTGGT
genomic: GGATTGATCGCCATGACCGATATGCTAACCGGAATGTTGTCTTTTTTGATgtaagattta ... tgttgtgcagATCAACATGAAAGGTTTGGATGGTATTCAGGGTCCAATTTATGTTGGT