Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatgaatgttttgtccag

Basic information

species Zea mays
transcript GRMZM2G024151_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 10
GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatg--aatgttttgtccag--------------------------
|||||||| |||||| |||| ||||||||||||||||| |||||| |||| ||||||||||| || || || ||||||||||||||||||  ||    |  |   | |   |      || ||    | | |   || |||  || ||||  |  ||   |  ||   | ||                           
GTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatatatt-taatggttgaagtacagataaattagtattatggcacttagttc-ctgagataattgtgcagacattcatttcataaatattttctgttacctttgaccag

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 10
GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcatgccattgtaca---ttatacatgatgga--aatacccctgt-tgactttggttttctaagatcttcatgaatgttttgtccag----------------------------------------------------------------------------------
 ||||||||||| | ||||| |||||||| || || ||||| ||  | || || |||||||| ||||||||| |||||| |||||| |||   | |  ||  | |   ||      | ||||     |    ||| || | || |      | ||| || | |   | ||    | |                                                                                  
ATATTCCACAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTgtgagtagcttcacttacagacagttgggtgcgttggattgtgatgtttgtgtggcgttcgcgaggcatgattttaaagcgagcttgcaacggcagcataccgatgcagttgaatacgatactgcattgcggatgattgatataacgatattaagaaagtggtttttatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338696|gb|DN205669.1|DN205669
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|21331839|gb|BQ487220.1|BQ487220
EST:     CTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60337200|gb|DN204173.1|DN204173
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCATAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|7136141|gb|AW498445.1|AW498445
EST:     CTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|6020932|gb|AW065860.1|AW065860
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|83279374|gb|DV943382.1|DV943382
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5055752|gb|AI734639.1|AI734639
EST:     CTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60349350|gb|DN216323.1|DN216323
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60340745|gb|DN207718.1|DN207718
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60358044|gb|DN225017.1|DN225017
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4646575|gb|AI491371.2|AI491371
EST:     CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32847515|gb|CD987196.1|CD987196
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32846077|gb|CD985758.1|CD985758
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60344051|gb|DN211024.1|DN211024
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60357663|gb|DN224636.1|DN224636
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4226310|gb|AI396417.1|AI396417
EST:     CTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|18176194|gb|BM351234.1|BM351234
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117968|gb|DN558929.1|DN558929
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATACACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|211161694|gb|FL418712.1|FL418712
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117965|gb|DN558926.1|DN558926
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5816345|gb|AI987261.1|AI987261
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60395743|gb|DN228613.1|DN228613
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|30032096|gb|CB833947.1|CB833947
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5917409|gb|AW054200.1|AW054200
EST:     CGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCCCTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5871273|gb|AW017744.1|AW017744
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60338887|gb|DN205860.1|DN205860
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4967195|gb|AI691889.1|AI691889
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117966|gb|DN558927.1|DN558927
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33092884|gb|CF052878.1|CF052878
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60394497|gb|DN227367.1|DN227367
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60396840|gb|DN229664.1|DN229664
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5922176|gb|AW055446.1|AW055446
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60395783|gb|DN228653.1|DN228653
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60350467|gb|DN217440.1|DN217440
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32928345|gb|CF033157.1|CF033157
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33097248|gb|CF057208.1|CF057208
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGA
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGA
EST: gi|60395644|gb|DN228514.1|DN228514
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|241994834|gb|GR421178.1|GR421178
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|211429305|gb|FL416846.1|FL416846
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|78544196|gb|DV621694.1|DV621694
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33097421|gb|CF057381.1|CF057381
EST:     GTACTCCCCAAATCTGAGATGCGCTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: GTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60346367|gb|DN213340.1|DN213340
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33104403|gb|CF064363.1|CF064363
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC
EST: gi|32827595|gb|CD967273.1|CD967273
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCT-CGAGATC
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatgaatgttttgtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG