Sequence
atgc intronic sequence ATGC exonic sequenceAACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 10
---AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
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TTGACCGGATGGGCCTTGGAAA---ATCCTCAAATGCTGAACCCCCAGAATTTGGTGCTGCAGCTGATGGTGATGCTGATCGCAACATGATTCTGGGTAAAAGgtat----tcttcag---cctagatagcttgaagtttttgtatatactcataagtgctatgagaaatttatgatgtgtcc--tttgcc----ttctag
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 10
AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
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CTCGTATGGGATTGGGCAAATCCGAACCACAAGATGATCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGATACTTGGTAAAAGgta-gtgttgccct--taatttgtggtgaatttaaatattctccaactttttgtgtgta----atatctgtg-tatcccctgtttgttag--------
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 10
AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
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CTCGTATGGGATTGGGCAAATCCGAACCCCAAGAAGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGgta-gtgttgtcct--taatttgtgatgaatttaaatattctctaacttt---tttgtgtaat--atctgtg-tatcccctgtttgttag--------
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 3
AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
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CTCGTATGGGATTGGGCAAATCTGAACCCCAAGATGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGgtagtgttgtccttaatttgtgatgaatttaaatattctctaacttttttgtgtaatatctgtgtatcccttgtttgttag-----------------
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 5'ss of exon 10
AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
||| ||||| | || || || | | | ||||||||| || ||||| || || |||||||| ||||| ||||| |||||||| || ||||||||||| | | | || | | | | | | | | | || || | | | | | | | | | ||| |||
CACGAATGGGATTAGGTAAATCCGACACTGGAGGTGAACCTCCAGAGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGTAACATGATCCTTGGTAAAAGgta------gcttactgacgttttcaagagagatacatccatggaact---agta--taccaagtacttttaaacttaaagtatctcttcatttgtag
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 10
AACGGATGGGTCTTGG--AAAGTCATCCT-CAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtaga------aagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
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---GCATGGGATTGAGTAAAACTGATGATGCTGGTGGCGAGCCTCCAGAGTTTGGCGCCGCTGCTGATGGTGATGCAGACCGAAACATGATCCTCGGTAAAAGgta-gcagagactaattctcttttaagtgagatcacagagatgtggagcggatataccactctccccgttaaccaaaaatatctcttctccgcag---------
upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 10
lower sequence: PP1S4_12V6.2 (Physcomitrella patens), 5'ss of exon 11
---AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag-------
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TGCAAGTTATGGGATTGGGCAAGA---CTCAACCTGACGAGATTCCGGAATTCGGTGCCGCTGCTGATGGTGATGCTGACCGAAACATGATTTTGGGCAAGAAgtatg---tgatcagggctcccatc-tac-gactccttgtcttaatctatctggaagttgatgtgatttctgtattcctgatcccgctaattctgtgttagctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116816329|gb|EC859054.1|EC859054EST: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAG ATTCTTTGTGACACCATCGGACTCTGTTGCCATTATAGCGGCCAATGCTGT
genomic: GGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctg ... gtgtttatagATTCTTTGTGACACCATCGGACTCTGTTGCCATTATAGCGGCCAATGCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACGGATGGGTCTTGGAAAGTCATCCTCAAATGTTGAACCTCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGCAACATGATTCTGGGTAAAAGgtatgatctgttcgagtatcttattatgtagaaagtttgttttggattctagataagcacaaggaattcatgatgcttcccctttgccgtgtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG