Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTCCCTTCTGTAAATTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattaccactttagttcagttcttctggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcag

Basic information

species Zea mays
transcript GRMZM2G022866_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022866_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 5'ss of exon 10
GGATCTCCCTTCTGTAAATTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattaccactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
|||||||| ||||||||| ||||||||||||| ||||| || || || || |||||  |||||||||||||  ||| ||   |       ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  ||| || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaataacgtta------caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---

upper sequence: GRMZM2G022866_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 9
--------------------------------GGATCTCCCTTCTGTAAATTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattaccactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
                                |||||||| ||||||||| ||||||||||||| ||||| || || || || |||||  |||||||||||||  ||| ||   |       ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  ||| || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
CAGAATCTGACCGGTGCATGCTTTATCATCAGGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaataacgtta------caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076799|gb|DV505233.1|DV505233
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|149104343|gb|EE289789.2|EE289789
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|18162906|gb|BM332745.1|BM332745
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|60401026|gb|DN233833.1|DN233833
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATTTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|76014575|gb|DT941745.1|DT941745
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|18171021|gb|BM340861.1|BM340861
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|78079812|gb|DV508224.1|DV508224
EST:     TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAG                         CTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|211020780|gb|FL433468.1|FL433468
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATYTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|45847020|gb|CN070963.1|CN070963
EST:     TTAGTACGAGAGACGCTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|71442261|gb|DR823311.1|DR823311
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|50324828|gb|CO519954.1|CO519954
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|12969746|gb|BG266636.1|BG266636
EST:     TTAGTACGAGAGACGCTTGTCGAGTTGGAATTGTCACATCTGCTACACAG                         CTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|5706290|gb|AI942066.1|AI942066
EST:     TTAGTACGAGAGACGCTTGTCGAGTTGGAATTGCCACATCTGCTACNCAG                         CTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACGCTTGTCGAGTTGGAATTACCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGTGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT