1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTCAGATATTCGTCTCGTGTGCAAAGAAGCTGCCATGCAACCACTGAGACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaattttttggttcttttgtgatttttgttggaattttcttttatgtatccagttaatttgtaccatgttagtttaaaaacacaaaatataggtccttgagttacgcgtactattatccgcaggcccaatgaacatatcttacatttctgtgttttttacgggtttgcag
species | Zea mays |
transcript | GRMZM2G022777_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|7216903|gb|AW563025.1|AW563025
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|7137663|gb|AW499208.1|AW499208
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCAEST: gi|32836835|gb|CD976513.1|CD976513
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|32838847|gb|CD978528.1|CD978528
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|32836962|gb|CD976640.1|CD976640
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGACCTTGCATTAAEST: gi|9733829|gb|BE512581.1|BE512581
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|32928805|gb|CF033617.1|CF033617
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAAEST: gi|33092259|gb|CF052253.1|CF052253
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
EST: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAG AACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
genomic: ACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaatttttt ... gggtttgcagAACTGCCTGAGGTTGGCCCTCTGAAACCTGATGATATTGAACTTGCATTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCAGATATTCGTCTCGTGTGCAAAGAAGCTGCCATGCAACCACTGAGACGTCTCATGTCAGTTCTTGAAGCCAGTGACGAGTTGGTTCCGGAGGAAGgtaattttttggttcttttgtgatttttgttggaattttcttttatgtatccagttaatttgtaccatgttagtttaaaaacacaaaatataggtccttgagttacgcgtactattatccgcaggcccaatgaacatatcttacatttctgtgttttttacgggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA