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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttagtttgtgaaatggtttaaaagaaattaacagttagaattatgtaggttgtctattcagttctcctactctgatatttatgaaccgtacacag

Basic information

species Zea mays
transcript GRMZM2G020002_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 13
GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttagtttgtgaaatg---gtttaaaagaaatta------------------acagttagaattatgtaggttgtctattcagt---tctcctactctgatatttatgaaccgtacacag
|| | |||||| ||||||||||  |||||||||| ||||||||||||| |  || ||||  |    |||||  |||| ||                  | ||| || | |     ||||   | | ||||   |||| || ||||| ||| ||  |  |||  |||
GTATCGAGGAAAGGATGCATATTATTTGGGACAGTATGGTGgtaagttgatattttgaatggtgtttttaatggaaaatattctacagtatcaaaaaaaaagtcagcaatccagtggttccatttccagtatatctctta-tctgacattcatacaatgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240936|gb|DT648850.1|DT648850
EST:     GTC-TGAGGGAACGGATGCATATACTTTGGGACAGCATGGTG                         GAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GTCTTGA-GGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
EST: gi|211361841|gb|FL432810.1|FL432810
EST:     GAACGGATGCATATACTTTGGGACAGCATGGT-                         --GACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
EST: gi|28187829|gb|CB179439.1|CB179439
EST:     GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTG                         GAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
EST: gi|78079711|gb|DV508123.1|DV508123
EST:     GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTG                         GAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
EST: gi|113703820|gb|EE681324.1|EE681324
EST:     GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTG                         GAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA
EST: gi|148929734|gb|EC876616.2|EC876616
EST:     GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTG                         GAGACTGGCAAGATTTCTGTATCCGACTATGTCAGAGTGACAAGCACAGAA
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... ccgtacacagGAGACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAA