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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaaatggcatttctcgttacatggccacatagctcatttttgtcgccttttccaatgaaaacctaattgtttgcttatacag

Basic information

species Zea mays
transcript GRMZM2G019267_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 5'ss of exon 11
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaaatggcatttctcgttacatggccacatagctcatttttgtcgccttttccaatgaaaacctaattgtttgcttatacag
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| |||| || |   ||||      | || ||   || |  ||||| | || |     |||| |   ||| |                      
AGGATATCGGCAAAAGATGCACTTGACGCGGAGTATTTCTGGACTGATCCCTTACCGTGTGATCCAAAGAGgtaca-tatgatggttaaatttgtcacgctgctaactagcttaattctaataactttgcatctgatacag-------------------

upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 12
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaaatg-gcatttctcgttacatggccacatagctcatttttgtcgccttttccaatgaaaacctaattgtttgcttatacag------------
|| ||  | || ||||||||||||||||| || ||||||||||| ||||| |||||||||||||| || ||||   | |      | |  |   ||||  |      | |       ||||      | |  |||   |   ||| || |       || |            
AGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGATCCCAAGAGgtaagaccttccatgtacattaagttatttattttgagaatgttactttgaaattatgtgaaatagga--ttaaatgctatgaagcacggacattgctcatc

upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G04410.1 (Glycine max), 5'ss of exon 11
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaaatggcatttctcgttacatggccacatagctcatttttgtcgcctt----ttccaat-gaaaacctaattgtttg-cttatacag---------------------------------------------------------------------------------------
|| ||  | || ||||||||||||||||| || ||||||||||| ||||| ||||| |||||||| || ||||   | |            | ||||  |      | |       ||||      |    |   ||| | |    ||| ||| || || ||  |                                                                                        
AGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCGTGCGATCCCAAGAGgttagaccttccatgtacattagttatttattttgagaatgttactttgaaattatgtgatcttaataggaggattaaatgtctgtctcattgattcctttcctttttactttattgtttctactcaactaatccttttctggtcaatacctttcaacttcatactcttctgtatggcttag

upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA20G10960.1 (Glycine max), 5'ss of exon 10
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtg--------caatcaaatggcatttctcgttacatggccacatagctcatttttgtcgccttttccaatgaaaacctaattgtttgcttatacag----------------------------------------------------------------------------------------------------
|| ||  | || || |||||||||||||| || ||||||||||| ||||| |||||||| ||||| || ||||         |||||  |||  |||     ||   |    |  |   |    || |  |   | |   ||    |    |||  ||||||||                                                                                                        
AGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACGGATCCATTACCATGTGATCCTAAGAGgtatgacctcccaatcccatgatattgaatatttactaaatat-tgattttccttcgaggaaatatgtgatcttcataggattaattgcttatctcatttgttctttccccatatgtttgttgtttcaatcaactatcatttactattttttatttttgaactcaccaagtcactattactcctatgtttggcttag

upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 9
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaaatggcatttctcgttacatggccacatagctcatttttgtcgccttttccaatgaa----aacctaattgtttgcttatacag------------
|| ||||| || || ||||| || ||||| ||||||||||||| ||| |||||||| |||||||| || ||||||  |         ||||   || |      | ||||    || |||  |  |||||  || ||    |||  |||  | ||  |  | |             
AGAATATCTGCCAAGGATGCTCTGGATGCTGAATATTTCTGGAATGACCCCTTACCTTGCGATCCCAAGAGgtgc--ttgcccaatgtttcaaatttcca---tatatagaattttattgatgaattttcagattaacataaacagaatactatgtctccataacatgaaaacaat

upper sequence: GRMZM2G019267_T01 (Zea mays), 5'ss of exon 11
lower sequence: PP1S121_162V6.1 (Physcomitrella patens), 5'ss of exon 10
AGGATATCAGCAAAAGATGCACTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgca-atcaaatggcatttctcg-------ttacatggccacatagctcatttttgtcgccttttccaatgaaaacctaattgt----ttgcttatacag-------------------------------------
 | || |  || ||||||||||| || || ||||||||||||||||| ||||| || ||| | ||||  |||||   |  |  ||||| |    |       | ||    ||    |||| | | |  ||     || |  ||  ||   | ||||    | | || ||                                        
CGAATCTGTGCTAAAGATGCACTCGACGCCGAATATTTCTGGACTGAACCCTTTCCCTGCCAACCAAGCAGgtgggcaggatctggcactcgatgaagtagttcactgatccggtcagctaagtctgatcaggactttctttgtgaagaaagttgtgacatggtttttaatattaatgttgctgatcgacaatttgtgtgttttcgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93282558|gb|EB674822.1|EB674822
EST:     CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAG                         CTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
genomic: CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaa ... gcttatacagCTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
EST: gi|32804528|gb|CD956764.1|CD956764
EST:     CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAG                         CTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
genomic: CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaa ... gcttatacagCTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
EST: gi|32804625|gb|CD956861.1|CD956861
EST:     CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCAATCCAAAAAG                         CTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
genomic: CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaa ... gcttatacagCTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
EST: gi|149099518|gb|EE185556.2|EE185556
EST:     CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAG                         CTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA
genomic: CTTGATGCGGAATATTTCTGGACTGATCCCTTACCATGCGATCCAAAAAGgtgcaatcaa ... gcttatacagCTTGCCCAAGTATGAGGCATCGCATGAATTCCAGACTAAGAAAAAGCGTCA