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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctcctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc...

Basic information

species Zea mays
transcript GRMZM2G017845_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017845_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g08400.2 (Oryza sativa), 5'ss of exon 10
GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctcctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc---
||||||||||||| ||| |||||| ||||||||| |||||||||||| |||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||      ||  | |||||   |||||| |||  | |     |    ||      ||| | |  |   | ||   |    ||   | | || |  |    
GAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGgtgaaccacttactatctgtttc--ataatgccattgttaccttgttgctactcttttaatat-caacaaaaactaggaggaatattcgaatttataactgat

upper sequence: GRMZM2G017845_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctc--ctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc
  |   | ||  |    |||||    ||||| ||||| || | ||||||    || |||||||||||||| |||||||||||| ||||||| ||||| ||||   || ||   ||| || | | |||      ||  | | |  ||    |      ||   | ||   | | | |   ||   |  | |  | |   |   
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatc--tcttatgctctctatcccaaaatgtttacttgcttgattagttttgatg-tatgtgtcgcaaccaaaaaatccctcctaaaatacag---

upper sequence: GRMZM2G017845_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctcctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc
      | ||  |    ||||| |  ||||| ||||| || |||||||| |  || |||||||||||||| |||||||| ||| ||||||| ||||||||||  |      |     | | | | | | |||  || |   |           ||  ||    ||     || | ||   |  |   | ||         
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtt-tacttgctttagtagttttgatgcatgtggcaaaaacaacctt---ccttgaatacag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211494703|gb|FL093389.1|FL093389
EST:     AATTCTTATTCTGTATGGTCTCCCAAG                         ATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG
genomic: AATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtc ... gttcttgcagATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG
EST: gi|110191747|gb|EC873645.1|EC873645
EST:     ACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAG                         ATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG
genomic: ACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtc ... gttcttgcagATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG
EST: gi|78116577|gb|DV534964.1|DV534964
EST:     ACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAG                         ATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG
genomic: ACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtc ... gttcttgcagATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCG