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GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatgattttttctttgttaaattagtagtgtgctctctgcaactgtgcagagtgattcattatatttattcccatctcccaaatgttaatctaaactgtaagttttaccag
species | Zea mays |
transcript | GRMZM2G017187_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAG GTTCCATGGGATGAAEST: gi|31612183|gb|CD568805.1|CD568805
genomic: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAA
EST: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAG GTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCAEST: gi|33094675|gb|CF054669.1|CF054669
genomic: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
EST: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAG GTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCAEST: gi|32808248|gb|CD960482.1|CD960482
genomic: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
EST: GATCTCTAAAG GTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCAEST: gi|29946880|gb|CB816370.1|CB816370
genomic: GATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
EST: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAG GTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCAEST: gi|78074585|gb|DV503019.1|DV503019
genomic: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
EST: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAG GTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
genomic: CGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatga ... gttttaccagGTTCAATGGGATGAACCTTCATCCATTCTTCGTCCAGATAGAATCTCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATCTCTGTGGGCAGATTCTGACTGGAGATCTCTAAAGgtaatgatgattttttctttgttaaattagtagtgtgctctctgcaactgtgcagagtgattcattatatttattcccatctcccaaatgttaatctaaactgtaagttttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC