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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACGgtaagaatgcattttaacctgtcaagtactcaagttcacgattcacaacaatattgagttctgccaaacagtacactttatttcatgatatggtttcatt...

Basic information

species Zea mays
transcript GRMZM2G017089_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017089_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 12
GTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACGgtaagaatgcattttaacctgtcaagtactcaagttcacgattcacaacaatattgagttctgcca---aacagtacactttatttcatgatatggt--ttcatt------
|| ||||||||| |||| ||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||||| || ||| || || |          || | |    | ||  ||||||  |||| ||| |   ||   ||  ||||| ||   |   |  |  |||||       
GTCTGGGACATCCGAACGAAAGCTCATGTTTCTGCTTTAACTGGTCATGATAACACCGTATGCTCAGTGTTTGCTCGTCCTACGgtaagaaagcttttgaatcttttgc-------agctta----ttactgcaatatctagttttgcgacttaatgttattctttagttggaggctttcttgttcatagccatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933221|gb|CF038033.1|CF038033
EST:     CTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACG                         GATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGAT
genomic: CTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACGgtaagaatgc ... cttgtctcagGATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGAT
EST: gi|71416740|gb|DR803804.1|DR803804
EST:     CTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACG                         GATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGAT
genomic: CTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACGgtaagaatgc ... cttgtctcagGATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGAT