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TGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATATTCCCTTAAGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatgttgtgccgctcccatgctatgttgtatcccaagttttatagcatgttttttcaggtatatatatctgaaacttcaaatttgtaaaagtga...
species | Zea mays |
transcript | GRMZM2G017086_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32932531|gb|CF037343.1|CF037343
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|211437528|gb|FK975648.1|FK975648
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32930082|gb|CF034894.1|CF034894
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32945380|gb|CF050199.1|CF050199
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT AAAATGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32866635|gb|CF006317.1|CF006317
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32932473|gb|CF037285.1|CF037285
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|32931528|gb|CF036340.1|CF036340
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCAT GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAEST: gi|67017287|gb|CO446036.1|CO446036
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCA
EST: AGTGTCATATATCTCAAGATGTGAACCATCNTCATGAGGGAATTAAGCAT GGCTTNGA-GACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGC
genomic: AGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatg ... ctttgtacagGGCTT-GAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATATTCCCTTAAGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGAATTAAGCATgtaagtaatgttgtgccgctcccatgctatgttgtatcccaagttttatagcatgttttttcaggtatatatatctgaaacttcaaatttgtaaaagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgctcc