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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag

Basic information

species Zea mays
transcript GRMZM2G015989_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 10
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag
|||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| || ||||| ||| || |   |  | |||   | | | ||  | |  | |  |||||| | ||| | ||||||||||   || |     |||   ||       | ||| ||  | |  |||  ||| |   ||  ||                
GTAGGAGCACAGACAGAAACTGAGCTTAAGGAAAAGAAACTGAGGGTTGAAGATGCACTGAATGCAACCAAGgtgaatacttc---tctttgttaatataatttaattttgggattgcattcagagagccttctgatgcacatagagtat----atgggtttg-----ttgtttgttacttaatagt--ttgctctgtggcag----------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 9
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag
|| || ||||| || || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||     | | |        || || ||| |     |  | | || ||   ||   ||     |    |  ||  | | || |||  || |                                                       
GTTGGTGCACAAACTGAGACTGAGCTCAAGGAAAAGAAATTGAGAGTTGAAGATGCTCTTAATGCTACAAAGgtatccttttctt--------tcccaaagttt-----ttagatttcttttgaattctgtttctgta---agctaatagtttgttgactttcag------------------------------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G18760.1 (Glycine max), 5'ss of exon 9
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag
|| || ||||| || || || ||||||||||||||||||||||| ||||| || || || ||||||||||||||      | | |        | |     | |    | ||  | ||  | |  ||      || || ||  | ||                                                                        
GTTGGCGCACAAACTGAGACAGAGCTCAAGGAAAAGAAATTGAGAGTTGAAGACGCTCTTAATGCTACAAAGgtgtccttttctttcccaaagtttttagattttttgggattctgtctgtaagctaatagtttgttg-actttcag------------------------------------------------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 10
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag
|| |||||||| || || || ||||| ||||| |||||||| || ||||| ||||| || ||||||||||||||||   |  ||| |    |    || ||         |||||  ||| || || |               |   |  | | || |                                                             
GTTGGAGCACAAACTGAGACAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGgtaa---catcatctctaag----caaagagccttgaaatgtttccatccatatggtagagactaagttgttggaccttttaattag------------------------------------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 9
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag
|| |||||||| || ||||| || || || |||||||||||||| || ||||||||||| ||||| |||||||||     ||  ||             |  ||  |  |   ||   |   ||   || | ||      || ||    |     ||  |||     |   |  ||||  | | ||   |   | ||| | | ||||| |||||   ||
GTCGGAGCACAAACTGAAACAGAACTTAAAGAAAAGAAATTGAGAGTGGAGGATGCCCTTAATGCAACAAAGgtactgtttaatta-------------aacatgaccatcaatttagaaatactctgctttctc-----catttgttgcctcactgccctttg---ctcttgcatttaagttaaggtgtaactggttcaaaattttcaatattgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093495|gb|CF053489.1|CF053489
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|67024753|gb|CO453502.1|CO453502
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|211490742|gb|FL282858.1|FL282858
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840618|gb|CD980299.1|CD980299
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32840181|gb|CD979862.1|CD979862
EST:     AACTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|22491347|gb|BU051270.1|BU051270
EST:     AAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|60396892|gb|DN229711.1|DN229711
EST:     AAAGAAATTGAGGGTTGAGGA-GCCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AAAGAAATTGAGGGTTGAGGATG-CCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32867895|gb|CF007577.1|CF007577
EST:     ATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: ATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32935097|gb|CF039909.1|CF039909
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
EST: gi|33093072|gb|CF053066.1|CF053066
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|67018624|gb|CO447373.1|CO447373
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840587|gb|CD980268.1|CD980268
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|211161903|gb|FL325520.1|FL325520
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCARCAGTCGAGGAAGGTATCGKTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|7238275|gb|AW573542.1|AW573542
EST:     AGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|78081966|gb|DV510378.1|DV510378
EST:     AAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCACCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTCCCCTTTTGAGG
genomic: AAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|33099832|gb|CF059792.1|CF059792
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
EST: gi|32840153|gb|CD979834.1|CD979834
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32933116|gb|CF037928.1|CF037928
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|33091567|gb|CF051561.1|CF051561
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32867923|gb|CF007605.1|CF007605
EST:     AGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840911|gb|CD980592.1|CD980592
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
EST: gi|37379284|gb|CF626383.1|CF626383
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32933836|gb|CF038648.1|CF038648
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
EST: gi|16926381|gb|BM079449.1|BM079449
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAAGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|31356086|gb|CD440443.1|CD440443
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|67018533|gb|CO447282.1|CO447282
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|29544666|gb|CB605046.1|CB605046
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|33095277|gb|CF055271.1|CF055271
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTA
EST: gi|67021281|gb|CO450030.1|CO450030
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|26457560|gb|CA829143.1|CA829143
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|211181594|gb|FL462638.1|FL462638
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840280|gb|CD979961.1|CD979961
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32840621|gb|CD980302.1|CD980302
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32840609|gb|CD980290.1|CD980290
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|33094337|gb|CF054331.1|CF054331
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
EST: gi|32934585|gb|CF039397.1|CF039397
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|211033566|gb|FL449282.1|FL449282
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATC---GTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840466|gb|CD980147.1|CD980147
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|67017327|gb|CO446076.1|CO446076
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|21891546|gb|BQ744759.1|BQ744759
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|40335213|gb|CK369283.1|CK369283
EST:     GGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: GGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|4834970|gb|AI670196.1|AI670196
EST:     AATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32841055|gb|CD980736.1|CD980736
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
EST: gi|78081967|gb|DV510379.1|DV510379
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|67011543|gb|CO440292.1|CO440292
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|67022736|gb|CO451485.1|CO451485
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAACGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|29945491|gb|CB815666.1|CB815666
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|33100370|gb|CF060330.1|CF060330
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|211268018|gb|FL355151.1|FL355151
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32841445|gb|CD981126.1|CD981126
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
EST: gi|37380525|gb|CF627079.1|CF627079
EST:     AATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|33095378|gb|CF055372.1|CF055372
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTAC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTAC
EST: gi|19272604|gb|BM888860.1|BM888860
EST:     AAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: AAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|166517412|gb|EG190511.1|EG190511
EST:     ATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
genomic: ATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGG
EST: gi|32840449|gb|CD980130.1|CD980130
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGT
EST: gi|32841470|gb|CD981151.1|CD981151
EST:     AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAG                         GCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC
genomic: AGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgcta ... atatttgcagGCAGCAGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAGGATGCCCTGAATGCTACAAAGgtaaatgctacatatggtggttctcacagtatacctgtatgttctcattcacatagcgtcctgatgcacaattagcactgtgatgatcttaaaatcctatttatttgtgatgagtccttgttagttgatagttttctatatttgcag

- - - - - - - - - - - AGCTCA
- - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - -  AGGATG