1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCTCGTTCTTGATGTTGTTCTTCACGTATGGCCTTTGCTTCTACGTCGGTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataaccaataaaacattcaccttgtaaattattcacttgctgatggcatgttcaaatgtactagagctctaaagttatttagagaaattaaaacgatccaactaacggttagttctgatgttttcccattcattgaaactaggcctgactgtccgtatgtttttccag
species | Zea mays |
transcript | GRMZM2G014089_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAG GTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCGEST: gi|33100186|gb|CF060146.1|CF060146
genomic: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataac ... gtttttccagGTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCG
EST: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAG GTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCGEST: gi|33099883|gb|CF059843.1|CF059843
genomic: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataac ... gtttttccagGTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCG
EST: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAG GTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCGEST: gi|33100358|gb|CF060318.1|CF060318
genomic: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataac ... gtttttccagGTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCG
EST: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAG GTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCG
genomic: GTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataac ... gtttttccagGTTTTCTTCGCGTTAGTTCTGGCAGCTATTGGAGTCTCGCAAGCGAGTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTCGTTCTTGATGTTGTTCTTCACGTATGGCCTTTGCTTCTACGTCGGTGCGCAGTTTGTGCGCCAGGGGAAAACTACCTTTCCAGATGTTTTCAAGgtaagataaccaataaaacattcaccttgtaaattattcacttgctgatggcatgttcaaatgtactagagctctaaagttatttagagaaattaaaacgatccaactaacggttagttctgatgttttcccattcattgaaactaggcctgactgtccgtatgtttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG