1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatcatacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag
species | Zea mays |
transcript | GRMZM2G013750_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGAGGGTTACCATAAAG-GGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|33093822|gb|CF053816.1|CF053816
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CAAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|32837081|gb|CD976759.1|CD976759
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|60345832|gb|DN212805.1|DN212805
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|60344063|gb|DN211036.1|DN211036
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|32847367|gb|CD987048.1|CD987048
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|60358924|gb|DN225897.1|DN225897
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|6031286|gb|AW076143.1|AW076143
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGEST: gi|67021450|gb|CO450199.1|CO450199
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatcatacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag
- - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT