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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatcatacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag

Basic information

species Zea mays
transcript GRMZM2G013750_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013750_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g63430.1 (Oryza sativa), 5'ss of exon 10
AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtat---catacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag
|||||||||||||| || ||||||||||| ||| ||||| | |||||||| || ||||| || ||| |||| |||||||||||| |   ||  | |  ||   ||  |  ||| ||   ||   | |  ||   ||      |||| |    |  ||     ||||||     | |||                                              
AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttcccagccttcctagcatcacttgtattcctcttgttactttgtagccta------ccaagatctaacatgccccacatttttctcattcag----------------------------------------------

upper sequence: GRMZM2G013750_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 5'ss of exon 10
AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtat---catacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag
|||||||||||||| || ||||||||||| ||| ||||| | |||||||| || ||||| || ||| |||| |||||||||||| |   ||  | |  ||   ||  |  ||| ||   ||   | |  ||   ||      |||| |    |  ||     ||||||     | |||                                              
AATATCTTGGTTGTTTCGAAGTACTATTCAAGGATTACCCTGAAGAGGCTCGCAGATCTTCTTTGCTTGAGCTTGCAGgtttgtgttcccagccttcctagcatcacttgtattcctcttgttactttgtagccta------ccaagatctaacatgccccacatttttctcattcaggag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110953365|gb|EE173417.1|EE173417
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|9743007|gb|BE519155.1|BE519155
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60354046|gb|DN221019.1|DN221019
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|19855108|gb|BQ060160.1|BQ060160
EST:     CGAGGGTTACCATAAAG-GGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|33091471|gb|CF051465.1|CF051465
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|37387451|gb|CF630919.1|CF630919
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|32837081|gb|CD976759.1|CD976759
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60342669|gb|DN209642.1|DN209642
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATTTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATTTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|4630552|gb|AI621426.1|AI621426
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|33093822|gb|CF053816.1|CF053816
EST:     CAAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|6031286|gb|AW076143.1|AW076143
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|78545102|gb|DV622600.1|DV622600
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60394675|gb|DN227545.1|DN227545
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|14243980|gb|BG841694.2|BG841694
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|37377438|gb|CF625322.1|CF625322
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60345832|gb|DN212805.1|DN212805
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60396663|gb|DN229531.1|DN229531
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|149074395|gb|EE162783.2|EE162783
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATTTGCTTTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|67021450|gb|CO450199.1|CO450199
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|31909273|gb|CD650836.1|CD650836
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|37400251|gb|CF637475.1|CF637475
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|37374825|gb|CF623804.1|CF623804
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|4628227|gb|AI619101.1|AI619101
EST:     CATAAAGAGGC-TGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|32847367|gb|CD987048.1|CD987048
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|211263071|gb|FL351825.1|FL351825
EST:     ATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGNCAG                         GAGCCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGC
genomic: ATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTG-CAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGC
EST: gi|60340462|gb|DN207435.1|DN207435
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCAGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|13381714|gb|BG458269.1|BG458269
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|6563654|gb|AW231381.1|AW231381
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|8930022|gb|BE224860.1|BE224860
EST:     CGAGGGTTACCATAAAGAGGCCTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|60358924|gb|DN225897.1|DN225897
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|211414360|gb|FL328790.1|FL328790
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|5055399|gb|AI734286.1|AI734286
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCCTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|32944129|gb|CF048948.1|CF048948
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGGACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|14245645|gb|BG874227.1|BG874227
EST:     TTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: TTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|4966662|gb|AI691518.1|AI691518
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|78023300|gb|DV491687.1|DV491687
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|5871332|gb|AW017803.1|AW017803
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|211279038|gb|FL066029.1|FL066029
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|40335770|gb|CK369840.1|CK369840
EST:     CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|13557647|gb|BG549003.1|BG549003
EST:     CGAGGGTTACCATAAAGAGGCCTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAAAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
EST: gi|5804749|gb|AI979719.1|AI979719
EST:     CGAGGGTTCCCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAG                         GAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG
genomic: CGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 188

AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGAAGATCGACAGGCCGATGGGAGTTGTGAGCTTCCGGGTAGTTCAGGACT


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 182

AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGAAGATCGACAGGCCGATGGGAGTTGTGAGCTTCCGGGTAGTTCAGGACT


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 231

AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGAAGATCGACAGGCCGATGGGAGTTGTGAGCTTCCGGGTAGTTCAGGACT


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 184

AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatca ... actctttcagGAGGCAGAGAAGCATCTTTCAGACATGGTGAACTCAAAATCTCTGACTGCGAAGATCGACAGGCCGATGGGAGTTGTGAGCTTCCGGGTAGTTCAGGACT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATATCTTGGTTGTGTCTAAGTACTATTCGAGGGTTACCATAAAGAGGCTTGCTGATCTGCTCTGCCTGAGTTTGCAGgtttgtatcatacattgtattttctttgttatgccatctgcggcgtcttatgttaaatgtcccaatacacgagttgtgaagcattttatagctgcagctacaatcgtgagatatctaactggcactgcacattactctttcag

- - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT