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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagctttaattattcccagtgaacactcttttttttaaaatcatttttggtgataagtggccttgagctgaaatttgatctgatgagccttttttggtacggtacttgcag

Basic information

species Zea mays
transcript GRMZM2G011893_T01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13388729|gb|BG462371.1|BG462371
EST:     GGGATAGCTTGGGATGAAAGAAGGCCCAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: GGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60352045|gb|DN219018.1|DN219018
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|211368558|gb|FL386260.1|FL386260
EST:     TCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|78179760|gb|DV550133.1|DV550133
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60393994|gb|DN226864.1|DN226864
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|211290372|gb|FL395524.1|FL395524
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCRGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60348982|gb|DN215955.1|DN215955
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|8577165|gb|BE129802.1|BE129802
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|78122303|gb|DV540687.1|DV540687
EST:     TGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60352117|gb|DN219090.1|DN219090
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|71428221|gb|DR809271.1|DR809271
EST:     TGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60350066|gb|DN217039.1|DN217039
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|12047218|gb|BF729357.1|BF729357
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|60357511|gb|DN224484.1|DN224484
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: gi|211246375|gb|FL451973.1|FL451973
EST:     TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG                         TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagctttaattattcccagtgaacactcttttttttaaaatcatttttggtgataagtggccttgagctgaaatttgatctgatgagccttttttggtacggtacttgcag

- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - -  AAGAAG