Sequence
atgc intronic sequence ATGC exonic sequenceAACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaaatggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 10
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtac-aattgtttatgtt-tttccaagtgaacaaatggttgaatgtc--aatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag
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GACAAATTTCCGTACCCAAATTGAAGCTGACATAAGGCCATTCAGAGGTTTGCTGCTTGGGTTGTTCTTTGTGACTACAGGAACTTCTATTGACATGGAGgtattaactgtttacctccttttcacatgagcaatgagttaaatgactgagccatgatctgttttggtgaacattacttcatatcacttaaatgagaaat----
upper sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 11
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaa-atggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag
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GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgt-taatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatggctattatgttaatttttctgttgtgtctgtgcatatatgcaa
upper sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 12
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaa-atggtt----gaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag
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GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattatcatttattgtatatgtagcatggtttttagatttctaagcatgtttattatgttaatttgattgttgtgtctgtgcatatatgctg-----
upper sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 11
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaaatggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag---
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AACAAATTTCCGAACACAAATTGAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGTTCTTTGTAACCACAGGAACTTCCATTGACATGGAGgta-aactgtt-atactgcattgcataagaactcagtt-atttccactgaaaaatatgatacatttcatgttcatg--ctcatgtggttaaaatcttttgcag
upper sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 11
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtg--aacaaatggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggcta--agatatatag
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AACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTATTTTTTGTAACTACAGGGACTTCAATTGACACGCAGgtgaatttgattatttaaagacatgtattgtccattagt--aatatcatatgtagttat-gtatgagtatagttttt-tgtgtgcttgaccacaagatcaatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211294444|gb|FL041061.1|FL041061EST: TGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAG CTTCTCATCCGGGAGTGGCCTAATGTTCTGTCACTGTTGGGGGGTCTTATT
genomic: TGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgt ... tgatatgtagCTTCTCATCCGGGAGTGGCCTAATGTTCTGTCACTGTTGGGGGGTCTTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaaatggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT