Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGCAGTCTCTGACTCCCTAGTAAGATACAAAGCTATGCGGATGCTTCGTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttagttttccatgatagaccagtggttttgaatctgataagagaacataacttgctacaacacacatgaaatgaaaccaaatgactcagtcttacccgtaaagcctaaattgtaaataaacagtaaacatttgtctttagacgtagggagagttcacatcttggttttccatatcag

Basic information

species Zea mays
transcript GRMZM2G006781_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006781_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g35290.1 (Oryza sativa), 5'ss of exon 11
ACATGCAGTCTCTGACTCCCTAGTAAGATACAAAGCTATGCGGATGCTTCGTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttagttttccatgatagaccagtggttttgaatctgataagagaacataacttgctacaacacacatgaaatgaaaccaaatgactcagtcttacccgta-aagcctaaattgtaaataaacagtaaacatttgtctttagacgtagggagagttcacatcttggttttccatatcag
||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||| || |||||  |    |   ||   || | |  |||  |||||  ||  ||              | ||  |||| | |  |    |||  |  ||||   ||  |     || |  |||| |     | || | | |||   ||| || |   |                                    
ACAAGCCGTTTCTGACTCCCTAGTCAGATACAATGCCATGCGGATGCTGCGTGGAAATGAGTCCTCTCTTTTCCTTTCACTTTGCCAGGCATTTATTGAGgtaag---gggcctctg-gaaaaaggagtatttttg--tccaat--------------tcctcaaacaaataatattccaaatta--tgaccaggtggtgtttctatacacctagagaaggattacatattaa---tttatcctcgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24767774|gb|CA402910.1|CA402910
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|31360458|gb|CD444815.1|CD444815
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|76018822|gb|DT945992.1|DT945992
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32837856|gb|CD977534.1|CD977534
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGACATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCGGACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32839358|gb|CD979039.1|CD979039
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGACATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCTGACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32836515|gb|CD976193.1|CD976193
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGACATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCGGACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|60347978|gb|DN214951.1|DN214951
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|110202470|gb|EC884367.1|EC884367
EST:     GGGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGGCCGCATGTTTTGGCCGATGCTACCCAAACGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGT-GCCGCATGTTTTGGCCGATGCTACCCAAACGG
EST: gi|83278283|gb|DV942291.1|DV942291
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32836806|gb|CD976484.1|CD976484
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGACATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCGGACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|211402668|gb|FL477442.1|FL477442
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32794424|gb|CD946660.1|CD946660
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|148999330|gb|EE036266.2|EE036266
EST:     ATGAGTCCGCCCTTTTTCCTTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: ATGAGTCCGCCC-TTTTCC-TTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|32827025|gb|CD966703.1|CD966703
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGACATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCGGACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
EST: gi|71316956|gb|DR795162.1|DR795162
EST:     GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAG                         GTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG
genomic: GTGGAAATGAGTCCGCCCTTTTCCTTTCACTATGCCAGGCATTCATCGAGgtttgtttag ... tccatatcagGTTGCATATCCTTATTGTGCCGCATGTTTTGGCCGATGCTACCCAAACGGG