1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaaatgtttgttgtgtatttaattttcattgtctaattattattctaaaagttcaattttgatgtgcag
species | Zea mays |
transcript | GRMZM2G006507_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|78106684|gb|DV525102.1|DV525102
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|74235735|gb|DT643649.1|DT643649
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|18964823|gb|BM661216.1|BM661216
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|31348516|gb|CD432873.1|CD432873
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|24763232|gb|CA398411.1|CA398411
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|22490474|gb|BU050397.1|BU050397
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTEST: gi|78544004|gb|DV621502.1|DV621502
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: GGGGAGAGACCAGGCGGGTGCACTGATCCACATCTACCACCATGTGCAGC ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaaatgtttgttgtgtatttaattttcattgtctaattattattctaaaagttcaattttgatgtgcag
- - - GAGGAG
- - - - AGGAGA