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CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtctaaacttgtgtagctctgtttttctatccagaaattgtcaatctgcagatctgtttttgtttttgacttgataacgctgacttgataactcctaacag
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|33100633|gb|CF060593.1|CF060593
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|14244855|gb|BG842793.2|BG842793
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13177701|gb|BG349130.1|BG349130
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|14243138|gb|BG840841.2|BG840841
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|113655660|gb|DW809180.1|DW809180
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: CGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|28984501|gb|BQ539125.2|BQ539125
genomic: CGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAA AGATGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|16379972|gb|BI993236.1|BI993236
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGATCTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|60396153|gb|DN229022.1|DN229022
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|211186706|gb|FL252851.1|FL252851
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: GGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13382144|gb|BG458819.1|BG458819
genomic: GGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAA-CTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|16925921|gb|BM078989.1|BM078989
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13177698|gb|BG349129.1|BG349129
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|37426214|gb|CF650858.1|CF650858
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|18650378|gb|BM499197.1|BM499197
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAGCTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCT-AATTCCAGEST: gi|33102029|gb|CF061989.1|CF061989
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAEST: gi|60358728|gb|DN225701.1|DN225701
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGC-ATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCA
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13178340|gb|BG349598.1|BG349598
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|211505179|gb|FL436188.1|FL436188
genomic: AAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|211507463|gb|FL431647.1|FL431647
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|60353604|gb|DN220577.1|DN220577
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|71774336|gb|DR972214.1|DR972214
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|60353656|gb|DN220629.1|DN220629
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAAATGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|116813437|gb|EC855888.1|EC855888
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATCAAGATGATGCCCAGCTGAATTCCAAEST: gi|76010925|gb|DT938095.1|DT938095
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|89755425|gb|DY685846.1|DY685846
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTTTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|33100890|gb|CF060850.1|CF060850
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGTGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|13178561|gb|BG349819.1|BG349819
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|16377885|gb|BI992166.1|BI992166
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTCTGGATGGAGTAAATAAAGATGATGCCCAGCTGAATTCCAGEST: gi|60346391|gb|DN213364.1|DN213364
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
EST: AGGACAAACTGATGCGGCTGAGGTTTAAGCGGAAGAACTGGGCCTGACAG CGTTGCATGTTTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
genomic: AGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtct ... ctcctaacagCGTTGCATGTCTGGATGGTGTAAATAAAGATGATGCCCAGCTGAATTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGCCTGACAGgttaaagtctaaacttgtgtagctctgtttttctatccagaaattgtcaatctgcagatctgtttttgtttttgacttgataacgctgacttgataactcctaacag
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAC