Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGCGGCTGTGTGCCCTAGCGGTGGGTCGTGCAGAGTCATTGAAGTTCCACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaagcttggtttgtgtggagtccgtcctcagattttaattttccacctttcaattttactgataaattgttatttctttggttcag

Basic information

species Zea mays
transcript GRMZM2G005849_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005849_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g03900.1 (Oryza sativa), 5'ss of exon 10
---TGCCGCGGCTGTGTGCCCTAGCGGTGGGTCGTGCAGAGTCATTGAAGTTCCACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttg-------tctaa---gcttggtttgtgtggagtccgt--cctcagattttaattttccaccttt----caattt----tactga-taaattgttatttctttggttcag
    ||  | || || ||||||||   ||| || ||||| || |||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||       | | |   | ||  |||      | |||    | ||   || |  |||  ||  | |    ||||||    |||||| |   ||||||||| || | |||||
AGACGCATCTGCCGTTTGCCCTAG---TGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattctttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtgttgttatttgttcg-ttcag

upper sequence: GRMZM2G005849_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g03720.2 (Oryza sativa), 5'ss of exon 10
---TGCCGCGGCTGTGTGCCCTAGCGGTGGGTCGTGCAGAGTCATTGAAGTTCCACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa-gcttggtttgt--------gtggagtcc---gtcctcagattttaattttccaccttt----caattt----tactga-taaattgttatttctttggttcag
    ||  | || || ||||||||   ||| || ||||| || |||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||   |  | |||  ||||         |  | | |     | ||   || |  |||  ||  | |    ||||||    |||||| |  |||||||||| ||   |||||
AGACGCATCTGCAGTTTGCCCTAG---TGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattgtttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtattgttatttgttcc-ttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7216484|gb|AW562606.1|AW562606
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|89248870|gb|DY620656.1|DY620656
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTGGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|148955139|gb|EC900656.2|EC900656
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTGGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|71771453|gb|DR969390.1|DR969390
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|149005283|gb|EE039832.2|EE039832
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|74242021|gb|DT649935.1|DT649935
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|211029256|gb|FL478423.1|FL478423
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|86855990|gb|DY307001.1|DY307001
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCCCGCGTACCATCTGACTGTTCTCCAGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|149014771|gb|EE044463.2|EE044463
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: gi|113842557|gb|DW969340.1|DW969340
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTACTCCGGGGATTCG
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTT-CTCCGGGGATTCG
EST: gi|111197488|gb|EE295623.1|EE295623
EST:     CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG                         TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA