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GATGACTATGCACAAAAAGCAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaattattcactcgcaagcaagaatacaaggggagataatgtgtgtgtgtgtgcgtgcgtgttgctctactcaagtgtgggtgggggtgggtgcg...
species | Zea mays |
transcript | GRMZM2G005308_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|211462206|gb|FL207483.1|FL207483
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|211459691|gb|FL207478.1|FL207478
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|24769907|gb|CA405036.1|CA405036
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|211183290|gb|FL434310.1|FL434310
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: AGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|60394413|gb|DN227283.1|DN227283
genomic: AGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|71764578|gb|DR962515.1|DR962515
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|71761969|gb|DR959906.1|DR959906
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|211183291|gb|FL434311.1|FL434311
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|31364214|gb|CD448569.1|CD448569
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|211462204|gb|FL207481.1|FL207481
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|76011806|gb|DT938976.1|DT938976
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|40303495|gb|CK347882.1|CK347882
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATEST: gi|37392792|gb|CF633649.1|CF633649
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
EST: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAG GCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
genomic: CAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaatt ... ttctacctagGCAAATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACTATGCACAAAAAGCAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGgtgagtaattattcactcgcaagcaagaatacaaggggagataatgtgtgtgtgtgtgcgtgcgtgttgctctactcaagtgtgggtgggggtgggtgcg
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaata