Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcctgacggtgtaaaatggtttaccttagattttttttgtaaccaagtggcatttagattttgaaatatcgacttgatcacttctaggaaggc...

Basic information

species Zea mays
transcript GRMZM2G003076_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 10
CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatg-----aatcctgacggtgtaaaatggtttaccttagattttttttgtaaccaagtggcatttagattttgaaatatcgacttgatcacttctaggaaggc
 |||| |||||  |||||||||||| ||| || |||||||| ||||||||||| || ||||| ||| | |||||| |||||||     | || |     |   |  |||| | | || | |  ||| | |   |||      || ||  ||  |  |||  | |  || ||||     ||   
ATGTGTCTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttgattcatttatttcctacttggtatgcttttgttcgtttatattgtcaaa--atgttaagcattcaacttatgcagt--atgacttacgacaact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166177|gb|BM336016.1|BM336016
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|16920930|gb|BM074899.1|BM074899
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|18170671|gb|BM340511.1|BM340511
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|71429006|gb|DR810056.1|DR810056
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|71429005|gb|DR810055.1|DR810055
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|18163841|gb|BM333680.1|BM333680
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|71319323|gb|DR796414.1|DR796414
EST:     CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTGgtatgaatcc ... gcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTG