1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCGTGGAGCGCATCAAGGCGGCGGTCTCCGGCGAGAGTGTTACCCAGCAGTAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaaaaacccaatcatatgaaggtttacaatttgcaagatttcatcccgttgtttcgtctgatcatcgtcggtcgccgcctttaatttgcag
species | Zea mays |
transcript | GRMZM2G001289_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|76286373|gb|DV025941.1|DV025941
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTTTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|29945586|gb|CB815715.1|CB815715
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|33468079|gb|CF245128.1|CF245128
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|78092031|gb|DV520405.1|DV520405
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|76911360|gb|DV164246.1|DV164246
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|31558851|gb|CD528063.1|CD528063
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAEST: gi|50337012|gb|CO532138.1|CO532138
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
EST: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAG GAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
genomic: TAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaa ... taatttgcagGAGCAGCAAGTTTTAGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTGGAGCGCATCAAGGCGGCGGTCTCCGGCGAGAGTGTTACCCAGCAGTAGCTAGCTTAGTCGAATCAGACACTCTTCTTATCCTTGCATCATTGAAGgtatgattaaaaacccaatcatatgaaggtttacaatttgcaagatttcatcccgttgtttcgtctgatcatcgtcggtcgccgcctttaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG