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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgttttctttatattctgttattatggtgcaaaattggatatctaacttggctaactccactcactctttttaattcaaaag

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000749_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g06190.1 (Oryza sativa), 5'ss of exon 10
GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgttttctttatattctgttattatggtgcaaaattggatat-ctaacttggctaact---ccactcact--------ctttttaattcaaaag
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GCTCTACATCAATGGAGAGATTATATAGCTCGTGAAGTAGATGAGAGCACTGGTTATGTGTTACCAAATAAGGCTTTAATTGAGATAGgtactgctgatttattt-----ttgtttttacggcacaggacttgatgtattagtttggctaactaactctttcatttccaccccctattgaattcaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987416|gb|BQ778944.1|BQ778944
EST:     AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: gi|211021453|gb|FL457596.1|FL457596
EST:     AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: gi|60341236|gb|DN208209.1|DN208209
EST:     AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: gi|88756696|gb|DY540837.1|DY540837
EST:     AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: gi|67040818|gb|CO467073.1|CO467073
EST:     TGCCAAATATGGCCTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGCGAAATCAA
genomic: TGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: gi|22543109|gb|BU093547.1|BU093547
EST:     AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG                         CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGCGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA