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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCCATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggtctgtttcagcatagaataaaataatttagcaagcacttgtctaacagtttttttttttcaaatcag

Basic information

species Zea mays
transcript GRMZM2G000645_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 10
AGTACCCATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggtctgtttcagcatagaataaaataatttagcaagca--cttgtctaacagtttttt---tttttcaaatcag
||||||  | ||||| ||||||||| |||| |||||||||||||| |||||||| || ||||| ||||| || ||||| || || |||||||| ||||| || |||||| ||||||    | |||||  |  |||  | ||   |  ||  ||| |     |  |   ||||   | ||||
AGTACCTGTGGCAAGCATGGATACCAGTGGAAAAATCATTTGGGCAAAACATAACGAGATACAGACTGTGAACATCAAAACTGTTGGTGCAGGCTTTGAGgtcagttggcctgtttgcaaacagaatcgatcaatcaaacagagaagctgatctcatgccctactatgttttcttattcag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 10
AGTACCCATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggtctgtttcagcatagaataaaataatttagcaagcacttgtctaacagtttttttttttcaaat-cag----------------
|| |||  |||| || ||||||| | |||||||||| |||||||| || ||||||||||| |||||||| ||||| | ||  || || |||| | | || ||| |      | |||   | |    |      | |  | |||||   ||  ||   |  |||  |  || || ||                 
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttaccctttttgtccgtgtaatatgtaagcaaaagtggaaacttgctttagtgacacatgcaagtattatgttttttag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 10
AGTACCCATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgta--agttggtctgtttcagcatagaataaaataatttagcaagcacttgtctaacagtttttttttttcaaat-cag----------------
|| |||  |||| || ||||||| | |||||||||| |||||||| || ||||||||||| |||||||| ||||| |  |  || || |||| | | || |||   | |  | | |  |    |  |      |||| | | |||||   ||  ||   |  |||  |  || || ||                 
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttacctttttttatccgtctaatat-gtaagcaaaagtggaaacttgctttagtgacacatgcaagtactatgttttttag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 10
AGTACCCATAGCAAGTATGGATACCGGTGGGAAAATCATTTGGGCGAAACATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaag---ttggtctgtttcagcat-agaataaaataatttagcaagcacttgtctaacagtttttttttttcaaatcag----------------------------------------------------------------------------------------
 | |||  | || || ||||||    |||| |||||||| ||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||||| | ||| || ||      |    |||||| |  || ||| | ||||||  |     | | |||| | | | ||| |||  |    |                                                                                            
GGCACCAGTTGCTAGCATGGATGGTAGTGGTAAAATCATATGGGCAAAACACAATGAAATACAGACTGTCAATGTCAAGGCAGTTGGTGCTGATTTCGAGgtggcgcctactcctgtttaaaaattagattcaaataaagttagttgtatttgttttatactttctttcctgtgcaatgttagttatcattagctatatttagaactatcatgtagtaatatcaaataactgaagctttttcatgtttttatttttatttttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26457397|gb|CA828980.1|CA828980
EST:     ATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAA                         GCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT
genomic: ATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggt ... ttcaaatcagGCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT
EST: gi|32865242|gb|CF004924.1|CF004924
EST:     ATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAA                         GCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT
genomic: ATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggt ... ttcaaatcagGCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT
EST: gi|31353243|gb|CD437600.1|CD437600
EST:     ATAATGAAATACAAACTGTAAATATCAACTCTGTCGGTGCAGGCTTTGAA                         GCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT
genomic: ATAATGAAATACAAACTGTAAATATCAAGACAGTCGGTGCAGGTTTTGAAgtaagttggt ... ttcaaatcagGCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGT