1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACTCAATTTGGCTTTACATCGTCCCATCGGGCATGTATGGAGTCGTGAACTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaataacctgtttccttcgtctgaaatgcttgcactcccttccatggtgctccttgaaccgcatcaacgaatcatggctccatgaatataataaatatcag
species | Zea mays |
transcript | AC217401.3_FGT002 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211180529|gb|FL077089.1|FL077089
genomic: CATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|32856217|gb|CD995898.1|CD995898
genomic: CATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGGACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211180526|gb|FL077086.1|FL077086
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: ATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|5525221|gb|AI861219.1|AI861219
genomic: ATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCNCGAGGAGTACGTGCNCGACGCCGEST: gi|67013218|gb|CO441967.1|CO441967
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211180531|gb|FL077091.1|FL077091
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60341656|gb|DN208629.1|DN208629
genomic: CATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|78075435|gb|DV503869.1|DV503869
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60343713|gb|DN210686.1|DN210686
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211180528|gb|FL077088.1|FL077088
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211180530|gb|FL077090.1|FL077090
genomic: CATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|78022826|gb|DV491213.1|DV491213
genomic: CATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60351674|gb|DN218647.1|DN218647
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60340042|gb|DN207015.1|DN207015
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60352866|gb|DN219839.1|DN219839
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60394083|gb|DN226953.1|DN226953
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|149014536|gb|EE044170.2|EE044170
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60358129|gb|DN225102.1|DN225102
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|211493767|gb|FL172983.1|FL172983
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: AAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|40336432|gb|CK370502.1|CK370502
genomic: AAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|78075434|gb|DV503868.1|DV503868
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: TAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|37393320|gb|CF633922.1|CF633922
genomic: TAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|60345028|gb|DN212001.1|DN212001
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|37391018|gb|CF632748.1|CF632748
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCGEST: gi|20507721|gb|BQ279747.1|BQ279747
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
EST: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACG GAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
genomic: CTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaa ... taaatatcagGAATGGATCAGCCTGGAAACCTCACGCGCGAGGAGTACGTGCACGACGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTCAATTTGGCTTTACATCGTCCCATCGGGCATGTATGGAGTCGTGAACTACCTAAAGGAAAAGTACCATAATCCAATCATCATCATATCGGAAAACGgtacctgaaataacctgtttccttcgtctgaaatgcttgcactcccttccatggtgctccttgaaccgcatcaacgaatcatggctccatgaatataataaatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA