1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGGTCCTGGCCGTCGCCATTCTCGCCGCTGCTTCGGCGGCGGCGCTCCTCCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatggcggacctcttcttctccgatcatccctgcgtcgattagtgtggcagttgacctgtcaggctcaggccttctctgaaccctaaatcccgt...
species | Zea mays |
transcript | GRMZM5G898668_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGTEST: gi|101395918|gb|EB819885.1|EB819885
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTGAAGGTGTEST: gi|91049522|gb|EB159940.1|EB159940
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGTEST: gi|71421490|gb|DR805460.1|DR805460
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGTEST: gi|78087615|gb|DV516008.1|DV516008
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTGAAGGTGTEST: gi|71325429|gb|DR799400.1|DR799400
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGTEST: gi|149021734|gb|EE045807.2|EE045807
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGTEST: gi|93012105|gb|EB637625.1|EB637625
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTGAAGGTGTEST: gi|148954400|gb|EC899817.2|EC899817
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
EST: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAG GAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
genomic: CCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatg ... aaaaacgcagGAAGCGCCGGCGACGTGCTGGAAGACAACCCCGTCGGGAGGCTAAAGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTCCTGGCCGTCGCCATTCTCGCCGCTGCTTCGGCGGCGGCGCTCCTCCTCGGGGCCGAGGCCCAGCAGCAGGGCCACCAGACAGAGAGGATCTCAGgtgagagatggcggacctcttcttctccgatcatccctgcgtcgattagtgtggcagttgacctgtcaggctcaggccttctctgaaccctaaatcccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT