1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCGCCTCTCCCGCCGCCGGGCCCCGGGCCCGACAGGGGCCCCCACGCTTTTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtactagtacgggccctggttgggtggtttggtgcccgatctaactgtccgagctgatgcggttcttgtgctttgcttccgccttttctcctttgcag
species | Zea mays |
transcript | GRMZM5G897342_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|101398258|gb|EB821002.1|EB821002
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|56382517|gb|CV985186.1|CV985186
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGGGGAA---TCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGATGGACCTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|24763701|gb|CA398872.1|CA398872
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|14203675|gb|BG837352.1|BG837352
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|211197448|gb|FL196886.1|FL196886
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|78122045|gb|DV540429.1|DV540429
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTCEST: gi|37400793|gb|CF637756.1|CF637756
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
EST: TTCAGCCCGGCGGGGAA---TCCTCCGCCGCCGACGCTTCCGCACATGTG GAGCCACAGGTGGATGGACCTGGCTCCGGCACCACCGTCGACTTCAAGTTC
genomic: TTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtacta ... tcctttgcagGAGCCACAGGTGGACGGAACTGGCTCCGGCACCACCGTCGACTTCAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCCTCTCCCGCCGCCGGGCCCCGGGCCCGACAGGGGCCCCCACGCTTTTCAGCCCGGCGCCGAATCCTCCTCCGCCGCCGACGCTTCCGCACATGTGgtttgtactagtacgggccctggttgggtggtttggtgcccgatctaactgtccgagctgatgcggttcttgtgctttgcttccgccttttctcctttgcag
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