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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAACACCAACTGCGCCGAGCTGCCGCAGACAACACCAACTGCACACTGCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactgattgaaattttcctttcctaaattgcaaacgcttgtacgaatcgagaagatgggagcagcagtgcagcactaccgtctctccctggaggt...

Basic information

species Zea mays
transcript GRMZM5G896731_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438321|gb|DR819371.1|DR819371
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|89248113|gb|DY619899.1|DY619899
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|78109136|gb|DV527553.1|DV527553
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|88756830|gb|DY540971.1|DY540971
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|91050003|gb|EB160421.1|EB160421
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|76293027|gb|DV032595.1|DV032595
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|91053266|gb|EB163684.1|EB163684
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|211387371|gb|FL162620.1|FL162620
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|78085320|gb|DV513713.1|DV513713
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACAACACCAACTGCGCCGAGCTGCCGCAGACAACACCAACTGCACACTGCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactgattgaaattttcctttcctaaattgcaaacgcttgtacgaatcgagaagatgggagcagcagtgcagcactaccgtctctccctggaggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA