1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGACAACACCAACTGCGCCGAGCTGCCGCAGACAACACCAACTGCACACTGCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactgattgaaattttcctttcctaaattgcaaacgcttgtacgaatcgagaagatgggagcagcagtgcagcactaccgtctctccctggaggt...
species | Zea mays |
transcript | GRMZM5G896731_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|78109136|gb|DV527553.1|DV527553
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|88756830|gb|DY540971.1|DY540971
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|71438321|gb|DR819371.1|DR819371
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|76293027|gb|DV032595.1|DV032595
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|91053266|gb|EB163684.1|EB163684
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|211387371|gb|FL162620.1|FL162620
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|91050003|gb|EB160421.1|EB160421
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAEST: gi|78085320|gb|DV513713.1|DV513713
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAACACCAACTGCGCCGAGCTGCCGCAGACAACACCAACTGCACACTGCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactgattgaaattttcctttcctaaattgcaaacgcttgtacgaatcgagaagatgggagcagcagtgcagcactaccgtctctccctggaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA