ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag

Basic information

species	Zea mays
transcript	GRMZM5G893252_T01
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
| ||  | | |  |  ||||| |  ||||||||||||||||||| ||||| || || |||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||    |||| || |    | ||||| |            ||| ||||  | |    ||        | ||  ||    ||  |       
CGACGGCGAGCGACCACCATGTCCTCCTCCACCTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccca----atcttccccttcactttctcgg-----------ggccagatctgatctgagatgaggttgacacacgacgcatgcaag-------

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCT--CCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaag---cacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctgg-tgcctag-------------------------------------------------------------------------------------
   |       || | | ||   | | |  |   |||||| |||||||| || || || ||||||||||||||||| ||||| || || |||||||||||||||  |   | | | |   || |       |   |||  | |  |  | || |     ||   |  ||      ||   ||        | || ||      ||                                                                                      
--GCAAAGGAATCAATCAATCAAGCCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataataatattagggtctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCA-TGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag-
||| | | || ||    || ||       |  | ||||||||||| |||||||| || || ||||||||||| || ||||| || || |||||||||||||||||        |  || || |         | |     | |||       |   |   |   ||  ||  | |     ||      |   | | | ||  
CCATC-CGACGTCGTTTCAGTGATAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtgttttcatgatctcttttgaatttcactttattaggataatt-taatgttcgatacgtaat

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCA-TGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag-
 ||   | || ||    || |        |  | ||||||||||| |||||||| || || ||||||||||| || ||||| || || |||||||||||||||||        |  || || |         | |     | |||       |   |   |   ||  ||  |||     ||      |   | |||  |  
-CAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgtaattcaatccctaatttctcaattagatctatgctcgtattttcttgatctcttttgaatttcactttatcaggaa-attttaatgttcgatgcgcaat

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 5'ss of exon 1

-CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccag--ccggatccaaccatccattcctcactc---ccatcacctcggctggtgcctag-
  |  | | |  |||||| |  |      |  |||||||||| || || ||||| || || ||||||||||| || ||||| || || |||||||||||||||    || | |   |    | ||  | ||  | |  || ||| ||  ||  ||| ||  | |  | ||||  | |      || |  |      ||     ||  
GTCGTCGC-AGATCCACCAACCGTTATGGCTGCCTTCAGCGGTGATGAAACGGCTCCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTgt----actccttccactctcttcaattcc--cccaatcacttccattagatccgtatttaccgtttcattatttatgtaatccgttcctaaaattgacttttaat

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctc-cctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
 | |  | | |   |  ||         |  |||||||||| ||||| || || || ||||| ||||||||||| |||||||| || ||||| || ||||||||  | | | |  |||    |        || | |||||| ||  ||       ||    | |    || | |  |   |  | |       |    ||
TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtc--gtcgttttatcttaaaccgtgtgtcgtttttgttttttcag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 5'ss of exon 1

---CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagca-cccatcagatctccctccctcccttctctgtctctttcaccagccggatccaac--catccattcctcactcccatcacctcggctggtgcctag
       | |||     || ||    ||   |  |||||||||||||||| || || || ||||| ||||||||||| |||||||| || ||||| || ||||||||  | | ||||| |||        |   || | | | | || ||    ||| | ||  |  | |    ||   |  |   |  | |       |    ||
CGTTTCTCGCCAAACAAACACAAAATGG---CTGCCTTCAGCGGCGACGAAACCGCACCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactcatcaaatcaaaga--gtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttc--tctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag--
   | | ||  |||||| |  |      |  |||||||||| || || ||||| || || ||||||||||| |||||||| || || ||||||||||||||||| ||   |||   ||||      ||  ||   || |||| |  |          |      |||| ||||| | |  || |   |   |   |  |  |  
GTCCTTGCAGATCCACCAACCGTTATGGCTGCCTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatca---atctactctcttcatttcaattagatccgtctttaccgtttcattatttatttaatcctttcctaattttca-ctttttatccaatttcatgtt

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagc-acccatcagatctccctccctcccttctctgtctctt---tcaccagccggatccaaccat----ccattcctcactcccatcacctcggctggtgcctag---------------------------------------------------------------------------------
  |        || | | |   |     |   |||||| |||||||| || || || ||||||||||||||||| ||||| || || |||||||||||||||  || || |     ||||| |||  |   ||     | | ||   | |     ||    |||| ||    | | |  | |  || | | |    |   ||   |                                                                                   
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttc-tctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag---
  | |||     | |  |   |     || || ||||||||||| || || || ||||||||||||||||||||||| || ||||| ||||| |||||||||||   |   |    |||   | ||    ||  ||||| ||||||  | |   ||||       |  || || |      | ||    | | | |  ||    
AGATCTCAGATACAAAACTCCGACATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCCGCACTCGTTTTCTCCTgtaatttcattttctctctgttttcccattttgatctgtttctttcttc-gtgagatcgtgttcccattttctgaaatttgttac---agattgcgtatatgat

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 5'ss of exon 1

-CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatcc-aaccatccatt--cctcactcccatcacctcggctggtgcctag
   |  ||||    | ||    | |   || |||||||| ||||| ||||| || || |||||||||||||| ||||| ||||| |||||||||||||| ||||   | |||||    ||| ||      || |    |||  ||  |     || ||  ||   | || |   ||        |    |   ||  ||     
TTAAGATCCAGAATCGCCTG-AGAGATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCTGCGCTCGTCTTCTCATgta--tatccatctatactctcttataatctccatcttcttcttttctctttggttctgaattgttcactgatcttgtgtgtgtttgttgttctcatgatct-

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccc--tcccttctctgtctctttcaccagccggatcc--aaccatccattcctcactcccatcacctcggctggtgcctag-
  | ||| ||  | ||       ||| || || ||||||||||| || || || || |||||||| ||||| ||||| |||||||| ||||| ||||||||||    |  ||     |   | |||  || ||| ||| | | |||| |      |||    | |||    |       ||| ||    |||| |  ||  |   
AGATCTCAACGACGACGAGCCATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTTTTCTCCTgtaccatctgatttctccattcccccgatctcttatctctttttttcccagaattgattttgatccaaatctgatctgatccgattcgatcggattatgtttcag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 5'ss of exon 1

CCACCTCCACCTCCA--CCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctcttt-caccagccggatccaacc-atccat-tcctcactcccatcacctcggctggtgcctag
   ||   || |  |   ||  |  |   || || ||||||||||| || || || || |||||||||||||| |||||||||||||| |||||||||||||||| || |   ||      | ||| |||  ||||||  |  ||   | ||  |   |  | |  |||||  |  |  || | |    ||      | |  |  
--TCCAAAACTTTGAGATCCGAGAAGATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGCGCCGCCGCCGCTCTCGTCTTCTCCTgtacgc-catttccttctcctctcactcgattctcttccaattcgtatcattccctttgatctgatccagatgattgcttctagagactttttatgagaat--

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 1

CCACCTCCACCTCCA--CCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
  ||   || |      || |||||  | ||    ||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||      |||||||      |||| ||| ||  | ||    |   |    | ||||   |         | ||  |||   |  | || |  |   
--ACAGTCATCAAAGAGCCAATGGCTTCTTCAGGTTTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCGCTCGTTTTCTCCTgtaaga---tttcagatc------cctctcttgtcaatttccccgaattgaatcacccaatgtttttgattcgattcgaatccgatttgatgttttcag-

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcc---tcactcccatcacctcggctggtgcctag
     | ||  |||||           || || ||||||||||| || ||||| || || ||||| |||||||||||||| || || ||||||||||||||||  ||  |   |  ||||  | |    | | |    | || || |||  |   ||||    | |  | |   |   |||    |   ||  ||        
GTCGTTTCAGATCCACTATCTAAAATGTCTACATTCAGCGGCGATGAAACGGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaaccctaattctctattcgcttcgttttca-cgctatctccattcttttccatttttacgctgcgtttggttcctgagaaaccgcatgaaaata--

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctg--tctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
|  ||   | | |              || ||||||||||||||||| || || ||||||||||||||||| |||||||| ||||| || || ||||| |||||  |||  |    ||||     ||   |  | ||    || | |   |      |   ||| |   |   |||||   |  |  | | |  | |     
CTTCCGATATCCCTGTAATCAAACATGTCTACCTTCAGCGGCGACGAAACCGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaataccttttttctctctgattctttttattttggtcttcatgctttatttcctttttaccctgtttgtttcactggaaa-atgttgtcccgagttat-

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1

CCACCTCCACCTCCACC-CATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag-----
 | |  | |  || | | |  |  |    | |||||||||||||| ||||| || || |||||||||||||||||||| || ||||| || || ||||||||||||     | | || |||   ||||   ||     ||  |||           |  ||   ||  ||  |   ||   ||   |    |  ||  | |     
-CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaag-----acctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37480 (Selaginella moellendorffii), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
                             | ||||||| ||||| ||||||||||||||||| || ||| ||||||| ||||| || ||||||||||| |||||||      |||||     | ||||  |  |||           ||    |||  | | ||| ||| |                             
------------------------ATGGACGCCTTCAGTGGCGATGAGACGGCGCCCTTCTTTGGATTCATCGGCGCTGCCGCAGCTCTCGTCTTCTCTTgtaagc------cagattctttttcctctttgatctaatcg------caatgcgatggatcaatcgattacag---------------------------

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag
                             | ||||||| ||||| ||||||||||| ||||| || ||| ||||||| ||||| || ||||||||||| |||||||      |||||     | ||||  |  |||           ||    |||  | | ||| ||| |                             
------------------------ATGGACGCCTTCAGTGGCGATGAGACGGCGCCATTCTTTGGATTCATCGGCGCTGCCGCAGCTCTCGTCTTCTCTTgtaagc------cagattctttttcctctttgatctaatcg------caatgcgatggatcaatcgattacag---------------------------

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACC---TTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctc-cctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag---------------------------------------------------------------------------------------
     ||       |  ||||||  || ||  |   ||||| ||||| |||||||||||||||||||| ||| | |||||||| || || || |||||||| ||||||  |    |   |||| || || |  ||   |||  |||           |       |  |    |  || | | ||  |||  ||| | |||  |                                                                                       
---AGTCGGGGGAGATTCATGGCTTCCACCGACGCATTCAGTGGCGATGAGACGGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttcttgcc---tctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaat-gcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcag

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 5'ss of exon 1

CCACCTCCACCTCCACCCATGGCGGCCTCCACC---TTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctc-cctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag---------------------------------------------------------------------------------------
     ||       |  ||||||  || ||  |   ||||| ||||| |||||||||||||||||||| ||| | |||||||| || || || |||||||| ||||||  |    |   |||| || || |  ||   |||  |||           |       |  |    |  || | | ||  |||  ||| | |||  |                                                                                       
---AGTCGGGGGAGATTCATGGCTTCCACCGACGCATTCAGTGGCGATGAGACGGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttcttgcc---tctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaat-gcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|149042118|gb|EE047097.2|EE047097

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|148966811|gb|EE017912.2|EE017912

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|33770901|gb|CF273195.1|CF273195

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284410|gb|FL293344.1|FL293344

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCG-CGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCG-CTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284418|gb|FL293352.1|FL293352

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|149105528|gb|EE291060.2|EE291060

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284417|gb|FL293351.1|FL293351

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|148933206|gb|EC876854.2|EC876854

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284408|gb|FL293342.1|FL293342

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284415|gb|FL293349.1|FL293349

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|32869037|gb|CF008719.1|CF008719

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211282611|gb|FL293341.1|FL293341

EST:     GGCG-CCTTCTTCGGCTTCCTCGGCGCCG-CGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCMTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284416|gb|FL293350.1|FL293350

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284412|gb|FL293346.1|FL293346

EST:     GGCG-CCTTCTTCGGCTTCCTCGGCGCCG--SCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCMTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|71758217|gb|DR956154.1|DR956154

EST:     CGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: CGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|148970145|gb|EE021086.2|EE021086

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211284411|gb|FL293345.1|FL293345

EST:     GGCG-CCTTCTTCGGCTTCCTCGGMGCCG-CSCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCG-CTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|110544375|gb|EE047096.1|EE047096

EST:     CGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: CGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|67010333|gb|CO439082.1|CO439082

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|13490789|gb|BG517553.1|BG517553

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGNGACGGCCAAGAGCGGCGTCGGCGTCGCCTCC
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGG-GACGGCCAAGAGCGGCGTCGGCGTCGCCTCC

EST: gi|211284413|gb|FL293347.1|FL293347

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|32803336|gb|CD955572.1|CD955572

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|211494947|gb|FL444513.1|FL444513

EST:     TTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: TTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|32801030|gb|CD953266.1|CD953266

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTTGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

EST: gi|148951810|gb|EC897573.2|EC897573

EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 155

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 225

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 230