1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACCAGCGGTACGACATACAGCAGGTGGCCAGGTGGGTGGAGCAGATACTGCCATTCTCACTGCTGCTGCTCGTCGTCTTCATCCGACAACATTTGCAAGgtggtgctctcatttcccttgtcaacagagcgcaaattcatatgtacatgaccaacttgatgcttagaacctagggtcacactatttgcaaattgaagtaatgtagatgtgtgagggaatgcaggctaattttcttcttcttttgaattgttttgcacag
species | Zea mays |
transcript | GRMZM5G890843_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCCTTCTCATTGCTGTTGCTCGTCGTCTTCATCCGACAACATTTGCAAG GTTTCTTTGTGACAATTTGGATTGCTGCGGTGATGTTCAAGTCCAATGATAEST: gi|211023733|gb|FL449222.1|FL449222
genomic: GCCATTCTCACTGCTGCTGCTCGTCGTCTTCATCCGACAACATTTGCAAGgtggtgctct ... ttttgcacagGTTTCTTTGTGACAATTTGGATTGCTGCGGTGATGTTCAAGTCCAATGATA
EST: GCCCTTCTCACTGCTGCTGCTCGTCGTCTTCATCCGACAGCATTTGCAAG GTTTCTTTGTGACAATTTGGATTGCTGCGGTGATGTTCAAGTCCAATGATA
genomic: GCCATTCTCACTGCTGCTGCTCGTCGTCTTCATCCGACAACATTTGCAAGgtggtgctct ... ttttgcacagGTTTCTTTGTGACAATTTGGATTGCTGCGGTGATGTTCAAGTCCAATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCAGCGGTACGACATACAGCAGGTGGCCAGGTGGGTGGAGCAGATACTGCCATTCTCACTGCTGCTGCTCGTCGTCTTCATCCGACAACATTTGCAAGgtggtgctctcatttcccttgtcaacagagcgcaaattcatatgtacatgaccaacttgatgcttagaacctagggtcacactatttgcaaattgaagtaatgtagatgtgtgagggaatgcaggctaattttcttcttcttttgaattgttttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT