Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCAGCGGACATCCTCGCCATCGCCGCGCCTGCCGTGCTCGCGCTCGCCGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagtactctgagctttgtaatccagtgcatttatccatttcaaacatagaatcatcccataccttgctcagctcttactctgccactgcaatgt...

Basic information

species Zea mays
transcript GRMZM5G890665_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G890665_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 1
GTTGCAGCGGACATCCTCGCCATCGCCGCGCCTGCCGTGCTCGCGCTCGCCGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaa--cccagtactctgagctttgtaatccagtgcatttatccatttcaaacata-gaatcatcccataccttgctcagctcttactctgccactgcaatgt
 |||    ||| |||||| ||||||||  |||||| |||||||| |||||||| |||||||||||||||||| ||||||| |||||||| || ||| |||||||   ||   | |     ||   | |     || | || ||| ||      |||  ||||  |   ||||   |        |  | | ||  |       
ATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggaccttaattgcttcctcacttactacttgtaattgtcccttcattctatacaaatctacatttaccgcacaagaaaaattatatccccttttgg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9731974|gb|BE510726.1|BE510726
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025186|gb|FL300502.1|FL300502
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGGTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025188|gb|FL300504.1|FL300504
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025181|gb|FL300497.1|FL300497
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025184|gb|FL300500.1|FL300500
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|148939832|gb|EC884537.2|EC884537
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|149072460|gb|EE160737.2|EE160737
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025185|gb|FL300501.1|FL300501
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025182|gb|FL300498.1|FL300498
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025183|gb|FL300499.1|FL300499
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025191|gb|FL300507.1|FL300507
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCNACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTTG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTT-G
EST: gi|76935587|gb|DV174390.1|DV174390
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|149085740|gb|EE175261.2|EE175261
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
EST: gi|211025193|gb|FL300509.1|FL300509
EST:     CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCG                         GTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG
genomic: CGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaacccagt ... ctcttctcagGTTCAGCTCAACTTGCGGCTGTTGGTGCATCTACTTCCATATTCAATTTGG